Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq115183 136 6e-27 seq194978 86.0 1e-11 seq194357 86.0 1e-11 seq121170 86.0 1e-11 >seq115183 Length=152922 Score = 136 bits (150), Expect = 6e-27 Identities = 196/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || ||||| |||||||| ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 137660 CTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATC 137601 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCGA 202608 || |||||||||||| |||||| | || || || | || | ||| || || || Sbjct 137600 GCCAGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATC-TGGAAGTGGGTGA 137542 Query 202609 CTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCT 202668 ||| ||||||| |||||||| || |||||||||||||| | |||||||| || || Sbjct 137541 TTTCATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCAGAGCT 137482 Query 202669 CCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCG--AT 202726 || || | || || ||| || | || ||| || ||||| || || |||| | Sbjct 137481 ACAGCTCTCGCGCGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCAG 137422 Query 202727 TCCATCTTCGACTACAAATTCGAAGACTTCGA 202758 || | ||||| ||| | | |||||||||||| Sbjct 137421 TC--TGTTCGATTACGAGTACGAAGACTTCGA 137392 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| ||||| ||||| || ||||| ||| || || || | ||| |||||||| | Sbjct 138083 AAAGGGGACCGCACCGGCACCGGCACGAACTCGGTATTTGGCCACCAAATGCGCTTCGAT 138024 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | | ||||| |||||| |||||||||| || | || || ||| | | Sbjct 138023 CTGTCGCAGGGTTTCCCGCTGATCACCACCAAGAAACTGCATACCCGCAGCATCTTTATT 137964 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 ||| |||||||||| | ||||| |||| | | | || |||| | ||| Sbjct 137963 GAGTTGCTGTGGTTTTTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTA 137904 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 |||||||||||||||||||| || || |||| | | |||||||| || ||| |||| Sbjct 137903 ACCATCTGGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGCAA 137844 Query 202082 TGGCGTAGCTGG 202093 |||||| |||| Sbjct 137843 TGGCGTTCCTGG 137832 >seq194978 Length=1758 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 1539 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 1480 >seq194357 Length=1599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 219 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 278 >seq121170 Length=1835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 779 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786081614796640