Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq115183 111 2e-19 >seq115183 Length=152922 Score = 111 bits (122), Expect = 2e-19 Identities = 216/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || || ||||| |||||||||||||| || | ||||| || || || ||||| ||| Sbjct 137660 CTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATC 137601 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || ||||| || || ||||||| |||| ||||| || ||| | ||||||| Sbjct 137600 GCCAGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGTGAT 137541 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928 ||| ||||||| || || || || |||||||| ||||| | ||||| || | | Sbjct 137540 TTCATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCAGAGCTA 137481 Query 196929 CAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGG--ATT 196986 |||||||| || | || | || ||||| ||||| || ||||| | | | Sbjct 137480 CAGCTCTCGCGCGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCAGT 137421 Query 196987 CCATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCA 197046 | | ||||| || ||| |||||| || |||||| | ||||| || || | | Sbjct 137420 C--TGTTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCCCCATA 137363 Query 197047 TTAAGGCACCGGTTGCC 197063 | ||||| || |||||| Sbjct 137362 TCAAGGCGCCTGTTGCC 137346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768428767377440