Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq121482 356 2e-93 seq120931 356 2e-93 seq106062 89.7 3e-13 >seq121482 Length=4042 Score = 356 bits (394), Expect = 2e-93 Identities = 420/567 (74%), Gaps = 6/567 (1%) Strand=Plus/Minus Query 61480 GTGTCAGTCGTCCGTGCGGAGGTACTGGTAGAGGGTTTCCCGGCTGATGTTGAACTCGCG 61539 ||||||| | | | ||| |||||||||||||||||||| ||||||||| | ||||| Sbjct 3991 GTGTCAGGCAGCGGCGCGAAGGTACTGGTAGAGGGTTTCGCGGCTGATGCCCATGTCGCG 3932 Query 61540 GGCAAGCTGCGCCTTGGGCTCGCCGGCCGTCGCTCGCTGCCGCAGGGTAGCAGCCTGCTC 61599 || | ||||||| | || ||||| | | || | |||| ||| | ||| Sbjct 3931 CGCGATGGTCGCCTTGCGTTCACCGGCGGCAACGCGGCGGTGCAGATCGGCAATCATCTC 3872 Query 61600 ATCGGACAGGGCTTTCTTGCGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATGCC 61659 ||| || || | || || ||||| || ||||| |||||| || | || ||||| Sbjct 3871 ATCCGAGAGCGACCGTTTCCGCCCCCGATAGGCGCCGCGCTGCCGAGCGATCGCAATGCC 3812 Query 61660 CTCACGCTGCCGCTCGCGGATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACCGA 61719 || || ||||| ||||||||||||||||||||||||||||| || || ||||| ||||| Sbjct 3811 TTCGCGTTGCCGTTCGCGGATCAGGGCGCGCTCGAACTCAGCAAACGCACCCATGACCGA 3752 Query 61720 CAGCATCAGGTTGGCCATCGGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGGAA 61779 |||||||| ||||||||||| |||||||| || | ||| ||||| |||||| || Sbjct 3751 GAGCATCAGATTGGCCATCGGGGAGTCCTCCCCCGAGAAGGACAGGCTTTCCTTCTCAAA 3692 Query 61780 CTCGATGCGCACGCCGCGCTGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGGTT 61839 |||||| || | || |||| || || ||| |||| ||||||||||| || || Sbjct 3691 CTCGATCCGGATACCTCGCTTGGTGAGGCCCTGGACCAGCTTGCGCAGGTCATCCAGATT 3632 Query 61840 GCGGGCCAGCCGATCCATGCTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTCAG 61899 |||||||| |||||||||||| || || || || ||||||||||||||| |||| | || Sbjct 3631 GCGGGCCAACCGATCCATGCTGTGGACGACGACGGTATCGCCTTCGCGGGCGAAAGTGAG 3572 Query 61900 CAGCGCTTCGAGCTGGGGGCGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAA---CAC 61956 ||| || || ||||||||||| | | ||||||||||||||||||||||||||| | Sbjct 3571 CAGAGCCTCAAGCTGGGGGCGGTTGACGTCCTTGCCCGATGCCTTGTCGGTGAAGGTCCG 3512 Query 61957 CTTGCTCACCTGGGTTTGTTCCAGCTGGCGTTCCGGGTTCTGGTCAAAGCTGCTGACCCG 62016 | | | ||| ||||| ||||| ||| ||||| || || |||||||||| Sbjct 3511 ATCGAGCGACTG---ACCTTCCAATTGGCGATCCACATTCTGATCGAACGTGCTGACCCG 3455 Query 62017 GACGTAGCCGATGCGGTGCCCCTGCAC 62043 ||| |||||||| || ||||||| ||| Sbjct 3454 GACATAGCCGATCCGTTGCCCCTTCAC 3428 >seq120931 Length=4269 Score = 356 bits (394), Expect = 2e-93 Identities = 420/567 (74%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 61480 GTGTCAGTCGTCCGTGCGGAGGTACTGGTAGAGGGTTTCCCGGCTGATGTTGAACTCGCG 61539 ||||||| | | | ||| |||||||||||||||||||| ||||||||| | ||||| Sbjct 33 GTGTCAGGCAGCGGCGCGAAGGTACTGGTAGAGGGTTTCGCGGCTGATGCCCATGTCGCG 92 Query 61540 GGCAAGCTGCGCCTTGGGCTCGCCGGCCGTCGCTCGCTGCCGCAGGGTAGCAGCCTGCTC 61599 || | ||||||| | || ||||| | | || | |||| ||| | ||| Sbjct 93 CGCGATGGTCGCCTTGCGTTCACCGGCGGCAACGCGGCGGTGCAGATCGGCAATCATCTC 152 Query 61600 ATCGGACAGGGCTTTCTTGCGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCGATGCC 61659 ||| || || | || || ||||| || ||||| |||||| || | || ||||| Sbjct 153 ATCCGAGAGCGACCGTTTCCGCCCCCGATAGGCGCCGCGCTGCCGAGCGATCGCAATGCC 212 Query 61660 CTCACGCTGCCGCTCGCGGATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATCACCGA 61719 || || ||||| ||||||||||||||||||||||||||||| || || ||||| ||||| Sbjct 213 TTCGCGTTGCCGTTCGCGGATCAGGGCGCGCTCGAACTCAGCAAACGCACCCATGACCGA 272 Query 61720 CAGCATCAGGTTGGCCATCGGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTCAGGAA 61779 |||||||| ||||||||||| |||||||| || | ||| ||||| |||||| || Sbjct 273 GAGCATCAGATTGGCCATCGGGGAGTCCTCCCCCGAGAAGGACAGGCTTTCCTTCTCAAA 332 Query 61780 CTCGATGCGCACGCCGCGCTGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCGAGGTT 61839 |||||| || | || |||| || || ||| |||| ||||||||||| || || Sbjct 333 CTCGATCCGGATACCTCGCTTGGTGAGGCCCTGGACCAGCTTGCGCAGGTCATCCAGATT 392 Query 61840 GCGGGCCAGCCGATCCATGCTATGCACCACCACTGTATCGCCTTCGCGGACGAAGCTCAG 61899 |||||||| |||||||||||| || || || || ||||||||||||||| |||| | || Sbjct 393 GCGGGCCAACCGATCCATGCTGTGGACGACGACGGTATCGCCTTCGCGGGCGAAAGTGAG 452 Query 61900 CAGCGCTTCGAGCTGGGGGCGCTGGGTGTCCTTGCCCGATGCCTTGTCGGTGAA---CAC 61956 ||| || || ||||||||||| | | ||||||||||||||||||||||||||| | Sbjct 453 CAGAGCCTCAAGCTGGGGGCGGTTGACGTCCTTGCCCGATGCCTTGTCGGTGAAGGTCCG 512 Query 61957 CTTGCTCACCTGGGTTTGTTCCAGCTGGCGTTCCGGGTTCTGGTCAAAGCTGCTGACCCG 62016 | | | ||| ||||| ||||| ||| ||||| || || |||||||||| Sbjct 513 ATCGAGCGACTG---ACCTTCCAATTGGCGATCCACATTCTGATCGAACGTGCTGACCCG 569 Query 62017 GACGTAGCCGATGCGGTGCCCCTGCAC 62043 ||| |||||||| || ||||||| ||| Sbjct 570 GACATAGCCGATCCGTTGCCCCTTCAC 596 >seq106062 Length=20311 Score = 89.7 bits (98), Expect = 3e-13 Identities = 209/310 (67%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 96704 TTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCATTT 96763 |||||||| || | ||||| || ||| | | | | ||| ||||||| || ||||| Sbjct 5933 TTATCAAAGCGAGTATATTGCCCCCGAAACGTGAGTATTACCTTGCCAATAGGACCATTC 5992 Query 96764 CGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA-TCCGGGTGATAAAC 96822 || |||||| | ||||| | ||| || | || || || | | || ||||| || Sbjct 5993 CGATGCTTTGCAATAATAATCTCTGCTTTACCTTT-ATCAGGAGAATCTTCATGATACAC 6051 Query 96823 TTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACG 96882 || || ||||| | ||| || || || || || || |||||||| ||||||||||| Sbjct 6052 CTCATCACGATAAATAAAAGCAATGAGATCAGCATCTTGTTCAATTGCACCTGATTCACG 6111 Query 96883 TAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTTGTG 96941 ||||| || | || || ||||| || | ||| ||| || | | ||||| || || | Sbjct 6112 CAAATCCGACATCACTGGACGTTTATCTGTACGAGCTTCTAAACTA-CGATTCAGCTGAG 6170 Query 96942 ACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCT 97001 | || || | || || | | |||||| || || | | | || | || || ||||| | Sbjct 6171 ATAAAGCGATAACAGGAATATTTAATTCTTTTGCTAGCTCTTTTAAAGAACGGGAAATTT 6230 Query 97002 CGGCAATTTC 97011 | | ||||| Sbjct 6231 CAGATATTTC 6240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330112458611944