Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq115183 154 6e-33 seq124163 114 5e-21 >seq115183 Length=152922 Score = 154 bits (170), Expect = 6e-33 Identities = 346/506 (68%), Gaps = 18/506 (4%) Strand=Plus/Minus Query 51808 AGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCC-CATCAGTGGTCGGGGAGTTG 51866 |||| |||||||| |||||||||||||| ||||| || || || | | |||||| Sbjct 138016 AGGGTTTCCCGCTGATCACCACCAAGAAACTGCATACCCGCAGCA-TCTTTATTGAGTTG 137958 Query 51867 CTGTGGTTGCTTTCGGGCTCTA-CGAACGTCAACGATCTCCATAAGTACGGCGTCAGCAT 51925 |||||||| || || | | | || || | || || || |||||| | ||| Sbjct 137957 CTGTGGTTT-TTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTAACCAT 137899 Query 51926 TTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCG 51985 |||||||||||||| || | | || || ||||| || || |||||| ||| ||||| Sbjct 137898 CTGGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGCAATGGCG 137839 Query 51986 TAGTTGGGATGCTGGTGGCGGCAAGGTCATC--GATCAGATC---CATGAAGTCGT-CAA 52039 | ||| | || | ||| ||||| || |||||| || ||| | || Sbjct 137838 TTCCTGGCCTACTCCCGATGGCC--GTCATATTGACCAGATCAGCCAGTTAGTGGAACAG 137781 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 ||| ||||| ||| || || || | ||||| || || ||||| || | || Sbjct 137780 ATCCGC-AAGAA---TCCCGACTCACGCCGCCTGATTGTTTCGGCCTGGAACGTAGCGGA 137725 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | ||| | ||||| || | || ||||| | || ||||| || ||||| || || || Sbjct 137724 TGTGGGCCAGATGGCCCTGCCCCCATGCCACGCCCTGTTCCAGTTTTATGTGGCAGACGG 137665 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 ||||| || ||||| | || ||||| |||||| || ||| ||||||| || || || Sbjct 137664 CAAGCTATCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAA 137605 Query 52220 CATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGTTG 52278 || |||||||| |||||||||| || |||| || | |||| | || || || || | Sbjct 137604 TATCGCCAGCTACGCCTTGCTGACTCACATGATGGCGC-AGCAATGTGATCTGGAAGTGG 137546 Query 52279 GTGAATTCATTTGGACTGGTGGCGAC 52304 |||| ||||| ||||||||||| ||| Sbjct 137545 GTGATTTCATCTGGACTGGTGGTGAC 137520 >seq124163 Length=12495 Score = 114 bits (126), Expect = 5e-21 Identities = 276/415 (67%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| |||||||| |||||| |||| | | || || | ||||| ||||| ||| Sbjct 5246 ATATGGGATGAATGGGCAGATGAACATGGAGAATTAGGACCCATTTATGGAAAGCAATGG 5187 Query 51984 CGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCA 52043 ||| |||| | || || ||| | |||||||||| || | | || | | | Sbjct 5186 CGTCATTGGCAGTGTGTTGATGGCCGGATCATCGATCAAATAGACCGACTCCTTGAGACT 5127 Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103 || || | |||||||| ||||| ||||| |||||||||||| || || || Sbjct 5126 ATAAAAACTAATCCTGATTCACGACGATTGATTGTAAGTGCTTGGAATGTAGGGGAATTA 5067 Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163 || | ||||| ||| | || || ||| ||| || ||||| || ||| ||| | | Sbjct 5066 AATCAAATGGCCTTGCCGCCATGTCATTTACTGTTTCAATTTTACATAGTTGATAGAACA 5007 Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATT 52223 |||| || | ||| || ||||| || || || || || || || ||||| ||| Sbjct 5006 ATTTCCTGTAAATTGACCCAACGGTCAGCAGATGCTTTTTTAGGTGTACCTTTTAATATT 4947 Query 52224 GCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGTTGGTGA 52282 || ||| | || | |||||| || | ||| ||||| | || | | || || || Sbjct 4946 GCTTCTTATGCTTTATTAACGCATATGGTGGCT-GAGCAATGTGATTTAAAGGTAGGAGA 4888 Query 52283 ATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGTT 52337 ||| |||||| | || ||||| ||||| ||||| || ||| | || || ||| Sbjct 4887 ATTTATTTGGTCGGGAGGCGATTGTCATATTTACAATAATCATTTGGAGCAAGTT 4833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189655619329240