Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq139319 82.4 9e-11 seq115877 82.4 9e-11 >seq139319 Length=12334 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 19832 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTG-GAG-GTT 19889 ||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||| ||| Sbjct 12035 GTGGCGGAATTGGTAGACGCGCTGGATTTAGGTTCCAGT-AGGTAATTCCTGTGAGAGTT 11977 Query 19890 CAAGTCCTCTC 19900 ||||| ||||| Sbjct 11976 CAAGT-CTCTC 11967 >seq115877 Length=932 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/71 (90%), Gaps = 4/71 (6%) Strand=Plus/Minus Query 19832 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAGTAATTCGTG-GAG-GTT 19889 ||||||||||||||||||||||||| ||||||||||||| | ||||||| || ||| ||| Sbjct 544 GTGGCGGAATTGGTAGACGCGCTGGATTTAGGTTCCAGT-AGGTAATTCCTGTGAGAGTT 486 Query 19890 CAAGTCCTCTC 19900 ||||| ||||| Sbjct 485 CAAGT-CTCTC 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620553450226080