Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq115183 104 2e-17 >seq115183 Length=152922 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 70375 CCTTCCACCATGTCATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCA 70434 ||| || ||||| || | || ||||| || | ||||| ||| || ||||| |||||||| Sbjct 137709 CCTGCCCCCATGCCACGCCCTGTTCCAGTTTTATGTGGCAGACGGCAAGCTATCTTGCCA 137650 Query 70435 GCTATATCAACGTAGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGC 70494 ||| || || || ||||| || ||||| || || ||||| |||||||| || || || Sbjct 137649 GCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATCGCCAGCTACGC 137590 Query 70495 CTTACTTACACATCTTATTGCTGCTG-AGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGA 70553 ||| || || || | || || || | | |||| | | || ||||| || | |||| Sbjct 137589 CTTGCTGACTCACATGATGGC-GCAGCAATGTGATCTGGAAGTGGGTGATTTCATCTGGA 137531 Query 70554 CTGGTGGTGATATCCATGTGTACTCGAATCA 70584 |||||||||| || ||||||| || || Sbjct 137530 CTGGTGGTGACTGTCACCTGTACTCCAACCA 137500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334776542920708