Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9079 123 6e-23 seq48326 116 9e-21 seq74841 89.7 1e-12 seq4323 89.7 1e-12 >seq9079 Length=83715 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| ||| ||||| || ||||||||||| | | || | || || Sbjct 3351 AGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCC 3410 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | ||||||||||| || Sbjct 3411 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 3470 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 |||||||| |||||| | || | | |||| ||| ||| ||||| || || ||| Sbjct 3471 TGAATTTTCGCCTTGACATTTTCAATGGTGTC---ACTCGGCTCAACTTCGAGCGTGATA 3527 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| |||||||| || | |||||| Sbjct 3528 GTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || || || || || || ||||| |||| | ||| | ||| || Sbjct 2439 AGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCC 2498 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| || | ||| ||||||| | || || ||||| || Sbjct 2499 TCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCC 2558 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || ||| | || | | |||| | ||| || || || || || || Sbjct 2559 TGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTC 2618 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| ||||||||||||| ||||||| Sbjct 2619 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2651 >seq48326 Length=57257 Score = 116 bits (128), Expect = 9e-21 Identities = 158/217 (73%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||| || ||||| || || |||||||| || | || || | || ||| Sbjct 53309 AGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCT 53250 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | |||||| |||| | || |||||||| | Sbjct 53249 TCGAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGT 53192 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || ||| |||||| | || | | |||| ||| ||| ||||| || || | Sbjct 53191 CCTGGATCTTTGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACTTCGAGCGTGA 53135 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || ||||| ||||| || || | |||||| Sbjct 53134 TGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 111 bits (122), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| ||| ||||| || ||||||||||| | | || | || Sbjct 52853 AGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGG---TCC 52797 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | ||||||||||| || Sbjct 52796 TCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 52737 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | |||| | ||| ||||| || || |||||| Sbjct 52736 TGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTT 52677 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||||||| || | |||||| Sbjct 52676 TTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Score = 111 bits (122), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| || ||||| ||||| |||||||| || | | || | || || Sbjct 53538 GAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTC 53479 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 |||||| ||| || || |||||||| | |||||| || | | || |||||||| || Sbjct 53478 TTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTC 53419 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAAT 152068 || ||||| || || |||| | |||| |||| || || || || || || Sbjct 53418 CTGGATTTTCGCCTTCACGTTCTCAATCGTGTC---ACTCGGCTCGACCTCCAGGGTGAT 53362 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||||||||||||| | ||||| Sbjct 53361 CGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || || || || || || ||||| |||| | ||| | ||||||| Sbjct 53765 AGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCT 53706 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| || | ||| ||||||| | || || ||||| || Sbjct 53705 TCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCC 53646 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || ||| | || | | |||| | ||| || || || || || || Sbjct 53645 TGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTC 53586 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| ||||||||||||| ||||||| Sbjct 53585 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 53553 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | || || || | Sbjct 53076 CAAG-TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCGA 53018 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | ||||||||| | | ||||| ||||| ||||| | Sbjct 53017 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGA 52958 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| || |||| | |||| || ||||| || || || || |||| Sbjct 52957 TCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCTTGC 52898 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||| || |||| |||||| Sbjct 52897 CAGTCAAAGTCTTGACAAAGATCTGCAT 52870 >seq74841 Length=4471 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| |||||||| ||||| |||||||| || | | || | || || Sbjct 2973 GAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTC 2914 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || |||||||| ||||| | ||||||||||| | || ||||| || || Sbjct 2913 TTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 2854 Query 152012 TTGAATTTT 152020 |||||||| Sbjct 2853 CTGAATTTT 2845 >seq4323 Length=113087 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| |||||||| ||||| |||||||| || | | || | || || Sbjct 37138 GAGGACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTC 37197 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || |||||||| ||||| | ||||||||||| | || ||||| || || Sbjct 37198 TTCGAGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 37257 Query 152012 TTGAATTTT 152020 |||||||| Sbjct 37258 CTGAATTTT 37266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150936809045364