Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq72223 89.7 5e-13 seq50140 89.7 5e-13 >seq72223 Length=2055 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| || || ||||||||||||||||| || || || || || ||| | ||||||||| Sbjct 1519 GGTGTTCTCCACACAAAATTTTGGATTGTCGACAACAAGCACATCTATGTAGGAAGTGCT 1460 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAAT 139525 |||||||||||| | || || ||||| || | |||| Sbjct 1459 AACATGGACTGGAGGTCTCTGACTCAGGTTAGTGAAT 1423 >seq50140 Length=27979 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| || || ||||||||||||||||| || || || || || ||| | ||||||||| Sbjct 19729 GGTGTTCTCCACACAAAATTTTGGATTGTCGACAACAAGCACATCTATGTAGGAAGTGCT 19670 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAAT 139525 |||||||||||| | || || ||||| || | |||| Sbjct 19669 AACATGGACTGGAGGTCTCTGACTCAGGTTAGTGAAT 19633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520216325437600