Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq176411 134 1e-26 seq48326 134 1e-26 seq74841 131 1e-25 seq4323 131 1e-25 seq9079 129 4e-25 seq2125 89.7 4e-13 >seq176411 Length=6678 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || ||||||||||||||||| ||| |||| ||| Sbjct 4817 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCC 4876 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | |||||| || |||| || | || ||||| ||| Sbjct 4877 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 4936 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || ||||||||| || || ||||||| || || ||||| Sbjct 4937 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 4996 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||||||||| Sbjct 4997 CCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 >seq48326 Length=57257 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| || ||||| ||| || ||| ||| || ||||||||||| || Sbjct 53100 CATGCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 53041 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| ||||||||||| | ||||||||| |||| Sbjct 53040 CGAAAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGG 52981 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||||| | |||| | || |||||| || || Sbjct 52980 TGGAATTCCCTCCTTGTCTTGGATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTT 52922 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || |||| ||| || ||||| || || | ||||| || ||||| |||||| Sbjct 52921 CAACTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATG 52869 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | || |||||||| || ||||||||| |||||||| || Sbjct 53556 CATTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTC 53497 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| || ||||| || || |||||||| | |||||||||||| | Sbjct 53496 AGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGG 53437 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| || ||| ||||| |||| | || ||||| | | Sbjct 53436 TGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCAC-GTTCTCAATCGTGTCACTCGGCT 53378 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || |||||||| ||||| || ||||||||||| ||||||||| Sbjct 53377 CGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCATG 53325 Score = 118 bits (130), Expect = 8e-22 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || || || || || ||||||||||| | || || ||| || Sbjct 52851 CACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG---GTCCTC 52795 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| || | ||| | |||||||| ||| Sbjct 52794 AAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTG 52735 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||| | || | || ||||| | || || || | ||| || || || Sbjct 52734 AATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTT 52675 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||||| |||||||| || || ||||||||| Sbjct 52674 TCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 52641 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| || |||||||| || | ||| ||| |||| || Sbjct 53306 ACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCG 53247 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||||||| | ||| | |||||||| ||| Sbjct 53246 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 53187 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | |||||||| || || || || | ||| || || || Sbjct 53186 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTA 53127 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| || || || |||||| Sbjct 53126 CCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || || ||||| |||| ||| ||| | || ||| Sbjct 53762 ACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCC 53703 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | |||||| || || | || | || ||||| ||| Sbjct 53702 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 53643 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || | ||||||||| | || ||||||| || || ||||| Sbjct 53642 ATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTG 53583 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 53582 CCGGTGAGGGTCTTCACGAAGATCTGCAT 53554 >seq74841 Length=4471 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || ||||||||||||| ||| ||| |||| ||| Sbjct 3197 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCC 3138 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | |||||| || |||| || | || ||||| ||| Sbjct 3137 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 3078 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || ||||||||| || || ||||||| || || ||||| Sbjct 3077 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 3018 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| ||||||||||||||| Sbjct 3017 CCGGTGAGGGTCTTAACGAAGATTTGCATG 2988 >seq4323 Length=113087 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || ||||||||||||| ||| ||| |||| ||| Sbjct 36914 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCC 36973 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | |||||| || |||| || | || ||||| ||| Sbjct 36974 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 37033 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || ||||||||| || || ||||||| || || ||||| Sbjct 37034 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 37093 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| ||||||||||||||| Sbjct 37094 CCGGTGAGGGTCTTAACGAAGATTTGCATG 37123 >seq9079 Length=83715 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| || ||||| ||| || ||| ||| || || |||||||| || Sbjct 2876 CATGCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTC 2935 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | |||| ||| |||| || |||||||| ||||||||||| | ||||||||| || | Sbjct 2936 TGAGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGG 2995 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| ||||| || ||||| ||||| | |||| | || ||||| || || Sbjct 2996 TGGGATACCCTCCTTGTCTTGGATCTT-TGCTTTGACGTTCTCGATCGTGTCACTGGGTT 3054 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | ||| ||||| || || || | ||||| |||||||| |||||| Sbjct 3055 CAACTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 3107 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || || || || || ||||||||||| | || || |||| || Sbjct 3353 CACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTC 3412 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| || | ||| | |||||||| ||| Sbjct 3413 AAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTG 3472 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||| | || | |||||||| | || || || | ||| || || || Sbjct 3473 AATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTT 3532 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||||| |||||||| || || ||||||||| Sbjct 3533 TCCCGTGAGTGTCTTCACAAAAATCTGCATGATG 3566 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || || ||||| |||| ||| |||| |||| ||| Sbjct 2442 ACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCC 2501 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||| | |||||| || || | || | || ||||| ||| Sbjct 2502 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 2561 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || | ||||||||| | || ||||| | || || ||||| Sbjct 2562 ATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTG 2621 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 2622 CCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 >seq2125 Length=82343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||||||| || || ||| || ||||||||||| || | Sbjct 75951 TCCACCACGCAGCCGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCCGA 76010 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || |||| | || ||||||||||| ||||||||||||| ||||||||| || | || Sbjct 76011 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCGGGCGG 76070 Query 44230 CACACCT 44236 | |||| Sbjct 76071 GATACCT 76077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359134491774828