Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq48326 145 2e-29 seq9079 140 8e-28 seq74841 104 6e-17 seq4323 104 6e-17 >seq48326 Length=57257 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || || ||||| || ||||| ||||| ||||| || || || ||| Sbjct 53101 CAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGA--GCCCAGTG 53158 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| |||||| |||||||| ||||| || |||||||| |||| Sbjct 53159 ACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGC 53218 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||||||||| || | || || | || || ||| Sbjct 53219 AGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAACA 53278 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || || ||||| || Sbjct 53279 TTCAGAAGGAGTCCACCCTTCATCTCGT 53306 Score = 136 bits (150), Expect = 9e-27 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 |||||||||||||| ||||| || || || ||||||||||| ||||| | ||| | | Sbjct 53329 CAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCG--AGCCGAGTG 53386 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || |||||||| || || || |||||||| ||||| || || || || |||| Sbjct 53387 ACACGATTGAGAACGTGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCAGC 53446 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || |||||||| || || |||||||| ||||| || | || || | || || ||| Sbjct 53447 AGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAACA 53506 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| || || || || || ||||| Sbjct 53507 TTCAAAAGGAGTCGACCCTTCACCTTGT 53534 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| || ||||| |||||||| ||||| ||||| || || || || Sbjct 52648 CAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGA--GCCTAGTG 52705 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 52706 ACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAGC 52765 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| || || | || || | ||||| ||| Sbjct 52766 AGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA---CCGTACGCTGTCTGATTACAACA 52822 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||||| || || || ||||| Sbjct 52823 TTCAGAAAGAAAGTACCCTTCACCTTGT 52850 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || ||||| || || || ||| | ||| Sbjct 52873 CAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGCGAC 52932 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| |||||| || ||||| || ||||| || || |||||||| Sbjct 52933 ACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 52992 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || ||| | || || ||| || Sbjct 52993 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAACATC 53052 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 53053 CAGAAAGAGTCCACCCTCCA-CTTG 53076 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || || ||||| ||||| || || || Sbjct 53557 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTTGA--GCCTAGCG 53614 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || || || |||||||| || || || || |||||||| | Sbjct 53615 ACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAAC 53674 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||| | |||||||| | ||||| |||| || || Sbjct 53675 AGCGTCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGGCGTACTCTCTCCGACTACAATA 53734 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 53735 TTCAGAAGGAATCGACCCTCCACCTTGT 53762 >seq9079 Length=83715 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| || ||||| |||||||| ||||| ||||| || || || || Sbjct 3559 CAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGA--GCCGAGTG 3502 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 3501 ACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGACCAGC 3442 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| || || || | || || | ||||| ||| Sbjct 3441 AGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTACAACA 3382 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||||| || || || ||||| Sbjct 3381 TTCAGAAAGAAAGTACCCTTCACCTTGT 3354 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || ||||||||||| || || || ||| | ||| Sbjct 3103 CAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGTGAC 3044 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| |||||| || ||||| || || ||||| || |||||||| Sbjct 3043 ACGATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAGCAG 2984 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | || || ||| | Sbjct 2983 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAACATT 2924 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 2923 CAGAAAGAGTCCACCCTACA-CTTG 2900 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || |||||||| || || || ||| | ||| Sbjct 3331 CAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGCGAC 3272 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| |||||| || ||||| || ||||| || || |||||||| Sbjct 3271 ACGATCGAGAACGTAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 3212 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||||||||| || || | || || | || || ||| | Sbjct 3211 CGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAACATT 3152 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 3151 CAGAAAGAGTCCACTCTTCACCTTGT 3126 Score = 104 bits (114), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || || ||||| ||||| || || || Sbjct 2647 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTAGAGGTTGA--GCCTAGCG 2590 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || || || |||||||| || || || || |||||||| | Sbjct 2589 ACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAAC 2530 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||| | || || || | ||||| |||| || || Sbjct 2529 AGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGGCGCACTCTCTCCGACTACAATA 2470 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||||| || || || ||||| Sbjct 2469 TTCAGAAGGAATCGACCCTCCACCTTGT 2442 >seq74841 Length=4471 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||||||||||||||| || |||||||||||||| || ||||| |||||||| || Sbjct 2845 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 2904 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || | || || | || || ||| | ||||| || || || || || Sbjct 2905 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 2964 Query 178125 CTTGT 178129 || || Sbjct 2965 CTCGT 2969 >seq4323 Length=113087 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||||||||||||||| || |||||||||||||| || ||||| |||||||| || Sbjct 37266 AAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTATTTTCGCCGGCAAG 37207 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||||||||| || | || || | || || ||| | ||||| || || || || || Sbjct 37206 CAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGGAGTCTACCCTTCAC 37147 Query 178125 CTTGT 178129 || || Sbjct 37146 CTCGT 37142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200722457314296