Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq1599 244 4e-60 seq3409 178 5e-40 seq3892 143 1e-29 seq1577 98.7 4e-16 seq6242 96.9 1e-15 >seq1599 Length=30855 Score = 244 bits (270), Expect = 4e-60 Identities = 252/329 (77%), Gaps = 13/329 (4%) Strand=Plus/Minus Query 60784 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 60843 |||||| ||||| |||||||| | ||| | ||| |||||||| ||||| |||| ||||| Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263 Query 60844 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 60903 ||| |||||||||||| || ||||| ||||||||||| ||| | ||||| || | ||| Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203 Query 60904 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 60963 ||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| | Sbjct 20202 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTCCGC 20143 Query 60964 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 61023 ||| ||||| |||||||||| |||||| | |||| || ||||| || Sbjct 20142 AATCCGTTCGGTAATCCACGTTGCAAAAGG-----------CAAGGAATTCATGTAGCTC 20094 Query 61024 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGCG 61083 || |||| | || || |||| |||||| ||||| || ||||| ||||||||| | Sbjct 20093 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 20034 Query 61084 TTGACTGGTCATGATGACCTCCT-TATTT 61111 ||| | ||||| | || |||| ||||| Sbjct 20033 TTGTGTTGTCAT-TTTACGTCCTCTATTT 20006 >seq3409 Length=8325 Score = 178 bits (196), Expect = 5e-40 Identities = 270/382 (71%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 26170 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 26229 || || | ||| || | || |||||||| || ||| |||| | || ||||| ||||| Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091 Query 26230 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 26289 ||||| || | |||||||||||| | | | || | | || | ||| Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151 Query 26290 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 26349 || | | |||||||| | |||||||| ||| | ||||||||||| || || | Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211 Query 26350 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 26409 ||||||| || || || ||||| ||||||| || || ||||||||||| || ||| | Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271 Query 26410 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 26468 || ||||| ||| | | |||| ||||| || |||| | ||||||||| ||| ||| Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330 Query 26469 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 26528 | |||||| |||||| |||| ||| |||||||| || | || ||||||||||| || Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390 Query 26529 GGTATCCCGTCGTGACCAGGAG 26550 | || | || |||||||||||| Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412 Score = 143 bits (158), Expect = 1e-29 Identities = 132/164 (80%), Gaps = 10/164 (6%) Strand=Plus/Minus Query 61085 TGACTGGTCATGATGACCTCCTTATTTGTTTAGTTT--ATAACCGCCAGTTAGTAGCTGG 61142 ||||| | ||| | | |||||||| | ||||||||| || ||| ||||||||||||| Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACC---AGTTAGTAGCTGG 1054 Query 61143 CGGTCGGGTGTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTG 61202 | |||| |||||||||| | | |||| | |||||||||||||||||||||| || ||| Sbjct 1053 TAGCCGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994 Query 61203 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTAACTATGCC 61246 ||||||||||||||||||| |||| ||||||| | || ||| Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954 >seq3892 Length=6556 Score = 143 bits (158), Expect = 1e-29 Identities = 221/307 (72%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 60782 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 60841 ||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| ||| Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431 Query 60842 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAA 60901 |||||| |||||| || || |||||||| || |||||||| ||| | | ||||| | Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCC--GA 3373 Query 60902 CCTATTTC-CCGTTTCTGG-GAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACT 60959 | |||| ||| ||||| |||| | || ||||| ||||| | || ||||||| Sbjct 3372 CAGTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACT 3313 Query 60960 CTTCAATACGTTCTGTAATCCACGATGCAAA----GCGTTTACCTAC-TCCAAGAAAAGT 61014 || ||| || || |||||| | || ||| ||| ||||| | ||| |||||| Sbjct 3312 CTGAAATTCGCTCACGAATCCA-GTTGGAAAAGTCGCG---GCCTACATTCAA-AAAAGT 3258 Query 61015 ATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATAC 61074 ||| | ||| || |||||| |||||| ||| ||||| || || ||||| || || || Sbjct 3257 ATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAAC 3198 Query 61075 GGGGATG 61081 |||||| Sbjct 3197 AGGGATG 3191 >seq1577 Length=31499 Score = 98.7 bits (108), Expect = 4e-16 Identities = 219/327 (67%), Gaps = 14/327 (4%) Strand=Plus/Plus Query 60782 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 60841 ||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| ||| Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988 Query 60842 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGT-CTTTTTTC----------- 60889 |||||| ||||| ||||| | ||||| || ||||||| ||| ||| Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048 Query 60890 CCTCGCCCATAACCTATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACG 60949 ||||| || ||| ||| | || || || |||||| ||||| | | Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108 Query 60950 AATCCGTACTCTTCAATAC-GTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAG 61008 ||||||||||| || | ||||| ||||||| | || ||| | || | || Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCT-TAATCCATGTTGAAAAATCACGGCGAACATCGAG 22167 Query 61009 AAAAGTATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTT 61068 || ||| | | ||| |||| | || ||||| | |||||||| ||||||||||| Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227 Query 61069 GAATACGGGGATGCGTTGACTGGTCAT 61095 ||| |||||||| | ||| ||||||| Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254 >seq6242 Length=2873 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/246 (69%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 18847 GGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAACAATTAGCCCTAAC 18906 || || ||||||||||| |||||| | |||||||| ||||||||| | ||||| ||| Sbjct 564 GGAGTAATTCAACTTCCCTCAATGGAGAAAGTTGAGAATAAACAATAGAATAGCCACAAC 505 Query 18907 AAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTAAGCGAGGCAGCATTATTGTC 18966 || | | || || || || |||||||||||||| | |||||| ||||| Sbjct 504 CGTTTTATGGAGGCTTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTT 445 Query 18967 GTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCG-- 19024 ||||| || | || || ||||| ||||| | | || || || |||| ||||| | Sbjct 444 GTCGCCCAACTTTCCCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385 Query 19025 AAGGGGCAACCGCGAAAA-----TACCACAAACCTTTTCTGAGGCATTGCGCCTTGCGGC 19079 || |||| |||||| |||| |||||||| || || ||||| || || || Sbjct 384 AATACTCAAC--CGAAAATCCGGTACCTCAAACCTTCTCAGAAGCATTAATGCTCGCCGC 327 Query 19080 CGACCT 19085 ||| || Sbjct 326 CGAACT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197183670081408