Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq9916 361 2e-95 seq11894 210 7e-50 >seq9916 Length=1312 Score = 361 bits (400), Expect = 2e-95 Identities = 744/1095 (68%), Gaps = 16/1095 (1%) Strand=Plus/Minus Query 35905 TGGCGATAGTGGGTATCATGTAGCCGCTTATGCTGGAAAGAAGCAATAACCCGCAGAAAA 35964 |||| | || || | |||||||||| || || || | | || ||| | ||| ||| Sbjct 1312 TGGCAACCGTTGGCAGCATGTAGCCGTCGATACTTGAGATCAA-AAGAACGC-CAGCAAA 1255 Query 35965 ACAAAGCTC--CAAGCTCAACAAAACTAAGGGCATAGACAATAACTACCGATGTCATATA 36022 ||||| | |||||||||||||||| || ||||| || || ||||| || ||||| || Sbjct 1254 GAAAAGCACACCAAGCTCAACAAAACTTAGTGCATACACGATGACTACAGAGGTCATGTA 1195 Query 36023 CCCATACTCTCTAATCTTGGCCAGTCGGCGCGTTCTGCTTCCGATTAGAAACGTCAAGGC 36082 || || |||| |||||| | | ||||||||||| || | |||||||| | Sbjct 1194 TCCGTATTCTCGAATCTTACTTAACTTTCTGGTTCTGCTTCCTATCATAAACGTCATTCC 1135 Query 36083 AGCAATCAGGATTGCAATCATGGTTCCTGCATATGATGACAATGTCGCCCCAAGACCATC 36142 || ||||||||||| ||||| ||||||||||| |||||||||| || ||||| ||||| Sbjct 1134 TGCGATCAGGATTGCTATCATTGTTCCTGCATAAGATGACAATGCGGCACCAAGTCCATC 1075 Query 36143 TCTATGAGCTGAAAAAGAAACACCAGGAATGTAGTGGCGGAAAAGGAGATAGCAAATGCT 36202 | |||| | |||||||| || || || | || || || |||| | ||| || | Sbjct 1074 TTTATGGGAAGAAAAAGACACGCCTGGCAGATAATGACGAAAAATAAAATATGAAGTAAA 1015 Query 36203 TACGATAACGTAAGGAATTATTACTATGTAAACACCAGGCATGATTCTGTTCCGCATAAT 36262 || | | |||||| || ||| ||| ||| || ||||| ||| |||| ||||||| Sbjct 1014 AACAAAGAGGTAAGGGATGGCTACAATGCAAATCCCGGGCATTATTTTGTTACGCATAAC 955 Query 36263 TACTCCTGATAATTAATCCT------TAACTTTGCCCACCTGCCTTTTAAAACATTCCAG 36316 |||| | ||| | || | | |||| | || | ||||| || | Sbjct 954 ACCTCCAGCGGATTTGTACTAGCGTGATAGTGTGCCTATTTGGCGATTAAAGCAGCTTAC 895 Query 36317 TATATCACTTTTCATTCTTGCGTAGCAATATGCCATCTCTTCAGCTATCTCAGCATTGGT 36376 |||| ||||||||||| | ||||||| ||| || ||||| || || ||||| || Sbjct 894 TATAGAGGATTTCATTCTTGTGAAGCAATAACTCATTTCCTCAGCAATTTCGGCATTTGT 835 Query 36377 GACCTTGTTCAGAG-GCGCTGAGAGATGGCCTTTTTCTGATAGATAATGTTCTGTTAAAA 36435 | |||| |||| | ||||| ||||| || ||||||||||||||||| |||| | | Sbjct 834 GGCCTT-TTCAATGATTGCTGAAAGATGACCCTTTTCTGATAGATAATGCTCTGAAAGGA 776 Query 36436 TATCTCCGGCCTCATCTTTTGCCCGCAGGCTAATGTCTGAAAATTGAGGTGACGGGTTAA 36495 |||| || ||||| ||| | || | || |||||| || || | |||| || || Sbjct 775 TATCACCAGCCTCTTCTCTAGCTCTCATGCTAATTTCAGAGTAAGGAGGATTTGGATTGT 716 Query 36496 AAATAATATC-CTTGGCAACCTTTTTTATATCCCTTTTAAATTTTGGCTTAATGACTATA 36554 | ||| || |||| | | ||| ||||||||| | ||||| || || | | Sbjct 715 TTACAATGTCTCTTGTC-GCTGATTTGATATCCCTTCTGTGCTTTGGTTTGATTATCACC 657 Query 36555 TCCAATGAGTCAAAAAGCTCCCCTTCAATATCTGTTGCCCCTAAGACCTTTAATATATCG 36614 || | || ||||| ||||| ||||||| || | |||||||| | | | ||||||| Sbjct 656 TCAATGGAATCAAATAGCTCATCTTCAATGTCCTTGGCCCCTAACGCTCTCATTATATCG 597 Query 36615 CCAAATACAGGTAGCTTGGCTTCTACCTTCACCGTTGTTCGGCCGATGAAATGCATATGC 36674 |||||| | || | |||| || || || |||| ||| ||||| ||| | Sbjct 596 ACAAATATCGTGGTGTTAGACTCTATTTTGACTGTGGTTCTGCCTATGAAGCTCATTGTC 537 Query 36675 ATAACATCGTCTTTGGTGGTTCCCCTCATCAGTGGCTCTATCTGAACGCGCTCTCCACTG 36734 |||||||| | || || || | |||||||||| |||| || || |||| | Sbjct 536 ATAACATCTTTCTTTGTTGTGCTTTTCATCAGTGGTTCTAGTTGCACCTTGGATCCA-TC 478 Query 36735 CTTAATGACATTCCTTTCCCGAT-TAAAAAATCTGTCAGATCGGATGTGGTCGGCCCGAA 36793 | || || | ||| | || |||||||||| | | ||| | || ||||| || | Sbjct 477 TTCGATAGCAATATTTTTACCATGTAAAAAATCTATTAAATCAGTGGTAGTCGGTCCATA 418 Query 36794 AACAGTTCTGGCAAAACCAATGGTGTCGCCTTCAACAAACAAAAAAGATGGGAATCCCAA 36853 ||| || || ||||| || || || | || || || | || | || || || | Sbjct 417 AACTGTCCTTGCAAATCCGATAACATCTTCGTCTACGAAAACGAATGCGGGAAAGCCAAG 358 Query 36854 TGATTCGTCATCTGCGAGGCTGTTCTTAATATCTTCAACTGAAGCTTTAGAGCGATTTAT 36913 ||||| ||||| |||||||| || |||||||| || | ||||| | || | ||||| Sbjct 357 AGATTCATCATCCGCGAGGCTTTTTTTAATATCCTCTATGGAAGCGCTTGACCTGTTTAT 298 Query 36914 CTTCTGAACCAGACTCTTGTCATTTGTTTTGGTAAAGAGAAAAGTTTTTCCATCGATTTT 36973 || || | ||||| ||||| |||||||| ||||| ||||| ||||| ||| || || Sbjct 297 TTTTTGTATAAGACTGTTGTCGTTTGTTTTTGTAAAAAGAAATGTTTTATTATCAATGTT 238 Query 36974 ATGAATATACAAATA 36988 ||||| ||| | ||| Sbjct 237 ATGAAGATAAAGATA 223 >seq11894 Length=1188 Score = 210 bits (232), Expect = 7e-50 Identities = 304/424 (72%), Gaps = 5/424 (1%) Strand=Plus/Plus Query 35841 GTCAAATTATATAGTTGGAAAACAAGGATGCATATATGAATGAACGATGCAGAGGCAATG 35900 || || ||||| || || | ||||| |||||||||||| || || |||| || || Sbjct 627 GTAAAGTTATAAAGCTGAATTACAAGCATGCATATATGAGCAAATGAGGCAGCAGCTATC 686 Query 35901 CCGATGGCGATAGTGGGTATCATGTAGCCGCTTATGCTGGAAAGAAGCAATAACCCGCAG 35960 |||||||| | || || | |||||||||| || || || | | || ||| | ||| Sbjct 687 CCGATGGCAACCGTTGGCAGCATGTAGCCGTCGATACTTGAGATCAA-AAGAACGC-CAG 744 Query 35961 AAAAACAAAGCTC--CAAGCTCAACAAAACTAAGGGCATAGACAATAACTACCGATGTCA 36018 ||| ||||| | |||||||||||||||| || ||||| || || ||||| || |||| Sbjct 745 CAAAGAAAAGCACACCAAGCTCAACAAAACTTAGTGCATACACGATGACTACAGAGGTCA 804 Query 36019 TATACCCATACTCTCTAATCTTGGCCAGTCGGCGCGTTCTGCTTCCGATTAGAAACGTCA 36078 | || || || |||| |||||| | | ||||||||||| || | |||||||| Sbjct 805 TGTATCCGTATTCTCGAATCTTACTTAACTTTCTGGTTCTGCTTCCTATCATAAACGTCA 864 Query 36079 AGGCAGCAATCAGGATTGCAATCATGGTTCCTGCATATGATGACAATGTCGCCCCAAGAC 36138 | || ||||||||||| ||||| ||||||||||| |||||||||| || ||||| | Sbjct 865 TTCCTGCGATCAGGATTGCTATCATTGTTCCTGCATAAGATGACAATGCGGCACCAAGTC 924 Query 36139 CATCTCTATGAGCTGAAAAAGAAACACCAGGAATGTAGTGGCGGAAAAGGAGATAGCAAA 36198 ||||| |||| | |||||||| || || || | || || || |||| | ||| || Sbjct 925 CATCTTTATGGGAAGAAAAAGACACGCCTGGCAGATAATGACGAAAAATAAAATATGAAG 984 Query 36199 TGCTTACGATAACGTAAGGAATTATTACTATGTAAACACCAGGCATGAT-TCTGTTCCGC 36257 | || | | |||||| || ||| ||| ||| || ||||| || | |||| ||| Sbjct 985 TAAAAACAAAGAGGTAAGGGATGGCTACAATGCAAATCCCGGGCATTATATTTGTTACGC 1044 Query 36258 ATAA 36261 |||| Sbjct 1045 ATAA 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155054344931616