Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq5722 239 3e-59 seq2192 100 2e-17 seq2120 100 2e-17 >seq5722 Length=3490 Score = 239 bits (264), Expect = 3e-59 Identities = 293/396 (74%), Gaps = 3/396 (1%) Strand=Plus/Minus Query 3562 TGGTCTTCACTCCAGCGCTTGTTACTGGCATGCCATTCTCGGGCGATAGCTTCAAAAGTA 3621 |||||||||||||| ||||| |||||||||| || |||||| | |||||| | Sbjct 799 TGGTCTTCACTCCATGTGAGATTACTTGCATGCCATTGTCTGGCGATGGTTTCAAATAAA 740 Query 3622 TATGCCCCCGAATTCTCGGCCCGAGCTTCTTTTTGTACGACTTTTGGGTCTATGCCCTGT 3681 ||||||||| | | || || | ||| | || ||| | |||||||| || || || ||| Sbjct 739 TATGCCCCCTCAATTTCAGCTTGTGCTCCCTTCTGTTCAACTTTTGGATCAATTCCTTGT 680 Query 3682 ACTAAAAGCTTTTTAGCTTCATCGCGTTTTGCTCTTGCCTGAGCAAGCGTCACAGTAGGC 3741 | ||||| || || ||| || ||| ||| || | || || || || || Sbjct 679 GACAGTAGCTTCTTCGCAGTATCACGCTTTACTCGGGCTTCTGCGAGTGTGGTTGTGGGG 620 Query 3742 CAAACACCAAACGCAAGACGATCCTCTTTTTTGTCAGAGGGACGTCTGTATTTCATGCGC 3801 ||||||| || ||||| ||||||||||| || ||||| ||||| | |||||||| ||| Sbjct 619 TAAACACCGAAAGCAAGCCGATCCTCTTTCTTATCAGATGGACGGCGATATTTCATACGC 560 Query 3802 CAGTATTTGGAACCTTTGGCCGAAACCTCAAGATACAAACCACCACCATCGGCCATTTTG 3861 |||||||| |||||||| | || || ||||| ||||| || || ||||| ||||| ||| Sbjct 559 CAGTATTTTGAACCTTTTGGGGATACTTCAAGGTACAACCCGCCGCCATCAGCCATCTTG 500 Query 3862 TAGGTTTTGTCTTTTGGCTTTGCGGTCTCGACCTGTCTGGCGTTGAGCTTCA-TTTGGGG 3920 |||| | |||| ||||||||||| || || | |||| | || ||||||| ||||||| Sbjct 499 TAGGCTCTGTCCTTTGGCTTTGCAGTATCAATTTGTCGAACATTAAGCTTCATTTTGGGG 440 Query 3921 GCAC-ATTTCTAATCGAAGTTAAGATGCCCCCAATT 3955 |||| | | || ||||||| | | ||||||||||| Sbjct 439 GCACAAATCCTGATCGAAG-TGGGGTGCCCCCAATT 405 Score = 190 bits (210), Expect = 2e-44 Identities = 520/793 (66%), Gaps = 20/793 (3%) Strand=Plus/Minus Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATC--------CAAATGC 2760 ||| | ||||||||||||||| || | |||||| || || || || ||| Sbjct 2724 ATCTATATAATCAGCCCACCATTGAAGCATTAACTTCCTTTCTTCTATGTATTCAGATGT 2665 Query 2761 --TCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCC 2818 || || ||||| ||||||| | |||| ||||| || |||||| | ||| | Sbjct 2664 ATTCAGATGTATGCATATATGAACCTTTAACATGTTTACGTTCAACGTGGCTTAATTGTC 2605 Query 2819 TCTCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCC 2878 | || || || |||||| |||| | | || || | || ||||| |||||||| || | Sbjct 2604 TTTCAATAGCATCATCATTCCACAGCTTTGATTCACTTAAAGCACCTCGCGCCATCGTTC 2545 Query 2879 TAAACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGT 2938 |||| ||||| || || || || ||||| || ||||| ||||| |||| || || || | Sbjct 2544 TAAATCCATGTCCGCAAACTTCAGTTTTGGTGTCATATCCCATAACACGTAAAGCACTAT 2485 Query 2939 TTACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTT 2998 ||| || || || ||||| || || | | |||||| || | ||||| | | ||| Sbjct 2484 TTATAGTATTCTCGCTCATTACTTTTTTGGGGTCATGGTCACTTGGAAATATAACCTCAC 2425 Query 2999 TATCACCACT-AATCTGCTTTAACTGGTTTAATAAAATCATCGCCTGTCGACTAAGCGGA 3057 || ||||| ||| | | || ||| | |||| | | | |||| ||| || ||| Sbjct 2424 GATTGCCACTCAATGTA-TATAGCTGTTGAAATACATTTAAAGCCTACTTACTGAGAGGA 2366 Query 3058 ACGATATGTTCCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAATTTCT 3117 ||||||||||| |||||| ||||| || || | |||| || || || | Sbjct 2365 ACGATATGTTCAGTTTTCATTTTCATTCCACGTTCAGAATGCTTTACGCCGGGTATGGGT 2306 Query 3118 TCTCGCTTTGCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCG 3177 | || | | |||||| ||| | ||| || || | ||||| ||| || || Sbjct 2305 TTACGGATACCGGGTATAGTCCATTCACTGCGATCAAAATCAATTTCATTCCACCGGGCA 2246 Query 3178 AAACGTAATTCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCAATCCGTGTC 3237 || || | ||||| || || | |||||| ||||| | | | || |||| ||| || Sbjct 2245 AACCGCATCTCACTTGAGCGAATAAAAGTCAGCAATGTTAATTCAACTGCAAGCCGCGTG 2186 Query 3238 ATTACACGGCCACGATATGCAGCAAGACGTGCAAGAAACTCAGGGAATCGGCTAGAAGGT 3297 |||| || || | || | || ||| | |||| ||||| | || | || ||| Sbjct 2185 ATTAATCGCCCTCTGTAGTTCGATAGTCGTTCTAGAAGTTCAGGTATTCTTTTTGAGGGT 2126 Query 3298 AAAGCAGGGTAATGTCGCGCTTTGGTTGTCGATAGCGCACCAGCCATATCGCTGGCTGGA 3357 | || || | ||| | ||| | | ||||| ||||||||||| |||| ||| Sbjct 2125 AGTGCTGGATGATGGGTTGATTTAACGCTTAAAAGCGCTCCAGCCATATCATTGGCGGGA 2066 Query 3358 TTTGAGTCGATGTAA----TCGTTCTGTACGGCATAACGCATAATGGCTGTGACGCGCTG 3413 || | ||||| || ||||| || || |||||||||| || || || ||||| Sbjct 2065 TTAAA----TTGTAAAAGGTCATTCTGGACACCAAAACGCATAATTGCCGTCACACGCTG 2010 Query 3414 TTGCAGGCGCTGAGCGACATCGTGTTTGCCACTGGCATCAACTTTTTTAATCGGGGCTAA 3473 ||| || ||||| || || || ||||| ||| |||||| || ||||| ||| | Sbjct 2009 TTGAAGTCGCTGTGCAACGTCATGTTTACCAGCGGCATCGACAGCTTTAACCGGCATAAG 1950 Query 3474 CAGGTGGCTGGTT 3486 || ||||||||| Sbjct 1949 GAGCTGGCTGGTT 1937 >seq2192 Length=16777 Score = 100 bits (110), Expect = 2e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8568 ACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACACaaaaaaaGACGCGT 8627 || |||||| |||||||||||||||||||||| ||| ||||||| |||||||||||| | Sbjct 11323 ACGCACCACGCCATAATCTGGCGCTCTGTGGCGTTGGTTGCGACGTAAAAAAAGACGCAT 11382 Query 8628 GGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCGGCTGCCGATTTTGCG 8687 |||||||| |||||| | | | | |||| | | ||||||||||| ||| | | Sbjct 11383 GGCGCGTCTGTCGTCGCCGATAACATACACGGGGTGGAATGCCCGGCTGCCCATTGAGGG 11442 Query 8688 GCA 8690 ||| Sbjct 11443 GCA 11445 >seq2120 Length=15447 Score = 100 bits (110), Expect = 2e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8568 ACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACACaaaaaaaGACGCGT 8627 || |||||| |||||||||||||||||||||| ||| ||||||| |||||||||||| | Sbjct 13823 ACGCACCACGCCATAATCTGGCGCTCTGTGGCGTTGGTTGCGACGTAAAAAAAGACGCAT 13882 Query 8628 GGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCGGCTGCCGATTTTGCG 8687 |||||||| |||||| | | | | |||| | | ||||||||||| ||| | | Sbjct 13883 GGCGCGTCTGTCGTCGCCGATAACATACACGGGGTGGAATGCCCGGCTGCCCATTGAGGG 13942 Query 8688 GCA 8690 ||| Sbjct 13943 GCA 13945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37074701292784