Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_001609.1
Length=11624
Score E
Sequences producing significant alignments: (Bits) Value
seq5722 239 3e-59
seq2192 100 2e-17
seq2120 100 2e-17
>seq5722
Length=3490
Score = 239 bits (264), Expect = 3e-59
Identities = 293/396 (74%), Gaps = 3/396 (1%)
Strand=Plus/Minus
Query 3562 TGGTCTTCACTCCAGCGCTTGTTACTGGCATGCCATTCTCGGGCGATAGCTTCAAAAGTA 3621
|||||||||||||| ||||| |||||||||| || |||||| | |||||| |
Sbjct 799 TGGTCTTCACTCCATGTGAGATTACTTGCATGCCATTGTCTGGCGATGGTTTCAAATAAA 740
Query 3622 TATGCCCCCGAATTCTCGGCCCGAGCTTCTTTTTGTACGACTTTTGGGTCTATGCCCTGT 3681
||||||||| | | || || | ||| | || ||| | |||||||| || || || |||
Sbjct 739 TATGCCCCCTCAATTTCAGCTTGTGCTCCCTTCTGTTCAACTTTTGGATCAATTCCTTGT 680
Query 3682 ACTAAAAGCTTTTTAGCTTCATCGCGTTTTGCTCTTGCCTGAGCAAGCGTCACAGTAGGC 3741
| ||||| || || ||| || ||| ||| || | || || || || ||
Sbjct 679 GACAGTAGCTTCTTCGCAGTATCACGCTTTACTCGGGCTTCTGCGAGTGTGGTTGTGGGG 620
Query 3742 CAAACACCAAACGCAAGACGATCCTCTTTTTTGTCAGAGGGACGTCTGTATTTCATGCGC 3801
||||||| || ||||| ||||||||||| || ||||| ||||| | |||||||| |||
Sbjct 619 TAAACACCGAAAGCAAGCCGATCCTCTTTCTTATCAGATGGACGGCGATATTTCATACGC 560
Query 3802 CAGTATTTGGAACCTTTGGCCGAAACCTCAAGATACAAACCACCACCATCGGCCATTTTG 3861
|||||||| |||||||| | || || ||||| ||||| || || ||||| ||||| |||
Sbjct 559 CAGTATTTTGAACCTTTTGGGGATACTTCAAGGTACAACCCGCCGCCATCAGCCATCTTG 500
Query 3862 TAGGTTTTGTCTTTTGGCTTTGCGGTCTCGACCTGTCTGGCGTTGAGCTTCA-TTTGGGG 3920
|||| | |||| ||||||||||| || || | |||| | || ||||||| |||||||
Sbjct 499 TAGGCTCTGTCCTTTGGCTTTGCAGTATCAATTTGTCGAACATTAAGCTTCATTTTGGGG 440
Query 3921 GCAC-ATTTCTAATCGAAGTTAAGATGCCCCCAATT 3955
|||| | | || ||||||| | | |||||||||||
Sbjct 439 GCACAAATCCTGATCGAAG-TGGGGTGCCCCCAATT 405
Score = 190 bits (210), Expect = 2e-44
Identities = 520/793 (66%), Gaps = 20/793 (3%)
Strand=Plus/Minus
Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATC--------CAAATGC 2760
||| | ||||||||||||||| || | |||||| || || || || |||
Sbjct 2724 ATCTATATAATCAGCCCACCATTGAAGCATTAACTTCCTTTCTTCTATGTATTCAGATGT 2665
Query 2761 --TCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCC 2818
|| || ||||| ||||||| | |||| ||||| || |||||| | ||| |
Sbjct 2664 ATTCAGATGTATGCATATATGAACCTTTAACATGTTTACGTTCAACGTGGCTTAATTGTC 2605
Query 2819 TCTCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCC 2878
| || || || |||||| |||| | | || || | || ||||| |||||||| || |
Sbjct 2604 TTTCAATAGCATCATCATTCCACAGCTTTGATTCACTTAAAGCACCTCGCGCCATCGTTC 2545
Query 2879 TAAACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGT 2938
|||| ||||| || || || || ||||| || ||||| ||||| |||| || || || |
Sbjct 2544 TAAATCCATGTCCGCAAACTTCAGTTTTGGTGTCATATCCCATAACACGTAAAGCACTAT 2485
Query 2939 TTACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTT 2998
||| || || || ||||| || || | | |||||| || | ||||| | | |||
Sbjct 2484 TTATAGTATTCTCGCTCATTACTTTTTTGGGGTCATGGTCACTTGGAAATATAACCTCAC 2425
Query 2999 TATCACCACT-AATCTGCTTTAACTGGTTTAATAAAATCATCGCCTGTCGACTAAGCGGA 3057
|| ||||| ||| | | || ||| | |||| | | | |||| ||| || |||
Sbjct 2424 GATTGCCACTCAATGTA-TATAGCTGTTGAAATACATTTAAAGCCTACTTACTGAGAGGA 2366
Query 3058 ACGATATGTTCCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAATTTCT 3117
||||||||||| |||||| ||||| || || | |||| || || || |
Sbjct 2365 ACGATATGTTCAGTTTTCATTTTCATTCCACGTTCAGAATGCTTTACGCCGGGTATGGGT 2306
Query 3118 TCTCGCTTTGCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCG 3177
| || | | |||||| ||| | ||| || || | ||||| ||| || ||
Sbjct 2305 TTACGGATACCGGGTATAGTCCATTCACTGCGATCAAAATCAATTTCATTCCACCGGGCA 2246
Query 3178 AAACGTAATTCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCAATCCGTGTC 3237
|| || | ||||| || || | |||||| ||||| | | | || |||| ||| ||
Sbjct 2245 AACCGCATCTCACTTGAGCGAATAAAAGTCAGCAATGTTAATTCAACTGCAAGCCGCGTG 2186
Query 3238 ATTACACGGCCACGATATGCAGCAAGACGTGCAAGAAACTCAGGGAATCGGCTAGAAGGT 3297
|||| || || | || | || ||| | |||| ||||| | || | || |||
Sbjct 2185 ATTAATCGCCCTCTGTAGTTCGATAGTCGTTCTAGAAGTTCAGGTATTCTTTTTGAGGGT 2126
Query 3298 AAAGCAGGGTAATGTCGCGCTTTGGTTGTCGATAGCGCACCAGCCATATCGCTGGCTGGA 3357
| || || | ||| | ||| | | ||||| ||||||||||| |||| |||
Sbjct 2125 AGTGCTGGATGATGGGTTGATTTAACGCTTAAAAGCGCTCCAGCCATATCATTGGCGGGA 2066
Query 3358 TTTGAGTCGATGTAA----TCGTTCTGTACGGCATAACGCATAATGGCTGTGACGCGCTG 3413
|| | ||||| || ||||| || || |||||||||| || || || |||||
Sbjct 2065 TTAAA----TTGTAAAAGGTCATTCTGGACACCAAAACGCATAATTGCCGTCACACGCTG 2010
Query 3414 TTGCAGGCGCTGAGCGACATCGTGTTTGCCACTGGCATCAACTTTTTTAATCGGGGCTAA 3473
||| || ||||| || || || ||||| ||| |||||| || ||||| ||| |
Sbjct 2009 TTGAAGTCGCTGTGCAACGTCATGTTTACCAGCGGCATCGACAGCTTTAACCGGCATAAG 1950
Query 3474 CAGGTGGCTGGTT 3486
|| |||||||||
Sbjct 1949 GAGCTGGCTGGTT 1937
>seq2192
Length=16777
Score = 100 bits (110), Expect = 2e-17
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 8568 ACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACACaaaaaaaGACGCGT 8627
|| |||||| |||||||||||||||||||||| ||| ||||||| |||||||||||| |
Sbjct 11323 ACGCACCACGCCATAATCTGGCGCTCTGTGGCGTTGGTTGCGACGTAAAAAAAGACGCAT 11382
Query 8628 GGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCGGCTGCCGATTTTGCG 8687
|||||||| |||||| | | | | |||| | | ||||||||||| ||| | |
Sbjct 11383 GGCGCGTCTGTCGTCGCCGATAACATACACGGGGTGGAATGCCCGGCTGCCCATTGAGGG 11442
Query 8688 GCA 8690
|||
Sbjct 11443 GCA 11445
>seq2120
Length=15447
Score = 100 bits (110), Expect = 2e-17
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 8568 ACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACACaaaaaaaGACGCGT 8627
|| |||||| |||||||||||||||||||||| ||| ||||||| |||||||||||| |
Sbjct 13823 ACGCACCACGCCATAATCTGGCGCTCTGTGGCGTTGGTTGCGACGTAAAAAAAGACGCAT 13882
Query 8628 GGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCGGCTGCCGATTTTGCG 8687
|||||||| |||||| | | | | |||| | | ||||||||||| ||| | |
Sbjct 13883 GGCGCGTCTGTCGTCGCCGATAACATACACGGGGTGGAATGCCCGGCTGCCCATTGAGGG 13942
Query 8688 GCA 8690
|||
Sbjct 13943 GCA 13945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 37074701292784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |