Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq33 127 2e-24 seq126 89.7 6e-13 >seq33 Length=2490231 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 24460 || ||| ||||| || | | ||| ||||| || || |||| ||||| || || ||||| Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 24461 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAA 24520 || ||||| |||||||| || || || | || |||||| || ||| | || |||| Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||||| || ||||| ||| ||| ||||| || ||||||||||| ||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 24630 |||||| || ||| | | || |||||| || | ||| | | ||| || Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459 Score = 100 bits (110), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || |||||| ||| ||||| ||| || || || || ||||||| || | || || Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | ||||||||| | |||||| ||||| || || | ||||| || || ||||| ||| Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529 Query 24279 ATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCC 24335 |||| ||||||| || || ||| | | | ||||| | |||||| || || Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 || || || |||||| || ||||| || |||||||||||||| Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425 >seq126 Length=1333976 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||||||| ||||| || |||||||||| ||| || | || |||||||| || | | Sbjct 1317146 CACTAAATGTCTTTTTGGTCTCTTTGTGTAAATTAGAAATTGCAATTCTAGCTGCCAATA 1317087 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||| |||||||||||| ||||| || || || | || || | | | | |||| Sbjct 1317086 TAGCAAAATCCGGATGTTTGGTAGTCATTGTAGCAGCAGTCTCCGCAGCTAAATTATCCA 1317027 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 |||| || ||||| |||||| |||| ||| || || ||||||| ||| Sbjct 1317026 ATTCCACGGTTGTGACTCCAGGGTATAGTCCACTTATTACTTTCATAGTTAT 1316975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593598870323760