Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq57 102 7e-17
seq504 98.7 9e-16
>seq57
Length=2082711
Score = 102 bits (112), Expect = 7e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| ||||| | || || || || || || ||||||||| ||| |||||| |
Sbjct 1619980 AATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTC 1619921
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| ||| | | || | || |||||| |||||||||||| | || ||||||
Sbjct 1619920 TGACACGATAGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 1619861
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||| ||| | |||||||| ||||| || |||||||| ||| || | || |||||
Sbjct 1619860 ACAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACAA 1619801
Query 29141 TATTCAGAAGGAATCTACT 29159
||| ||||| |||||||||
Sbjct 1619800 TATCCAGAAAGAATCTACT 1619782
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| |||||| ||||||| || || || |||||||| ||| ||| ||||| |
Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | || |||||| |||||||||||| | || |||||||
Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 1620316
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|| || | |||||||| ||||| || |||||||| || | ||| | | |||||||
Sbjct 1620315 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACACTGT--CTGATTACA 1620258
Query 29140 ATATTCAGAAGGAATCTAC 29158
|||| ||||| || || ||
Sbjct 1620257 ATATACAGAAAGAGTCCAC 1620239
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| |||| || | || || ||||| ||||| ||| ||||| |
Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || ||||| |||||| ||||||||||| | || ||| ||
Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCA 1621001
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||||||| | ||||| || || || || | |||||| | ||| | | ||||| ||
Sbjct 1621000 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620941
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||| ||||||||||| || | || | || || |||||||
Sbjct 1620940 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGG 1620893
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| ||| | ||||| |||| || ||||| ||||| ||| || ||| |
Sbjct 1619296 AATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTC 1619237
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || |||| ||||| ||||| ||||| | || ||||||
Sbjct 1619236 TGATACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCA 1619177
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| | ||||| ||||| || || || |||||||| | |||| | | ||||||||
Sbjct 1619176 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAA 1619117
Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164
|||||| ||||| || || |||||
Sbjct 1619116 TATTCAAAAGGAGTCCACCCTTCA 1619093
>seq504
Length=327254
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017
||| |||||||| || | ||||| |||||||| ||||| |||||| || |||||
Sbjct 214297 AAATATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGAACC 214238
Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077
| |||| || | | || ||||| ||| || ||||||||||| | || |||
Sbjct 214237 CTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCCAGA 214178
Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137
||| |||||| | || ||||| |||||||| || |||||| || | |||||||
Sbjct 214177 TCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCGATTA 214118
Query 29138 CAATATTCAGAA 29149
|||||| |||||
Sbjct 214117 CAATATCCAGAA 214106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428249671154735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |