Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq57 102 7e-17 seq504 98.7 9e-16 >seq57 Length=2082711 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| | || || || || || || ||||||||| ||| |||||| | Sbjct 1619980 AATGCAGATATTTGTTAAGACCTTAACTGGAAAGACCATTACCTTAGAAGTGGAACCGTC 1619921 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || | || |||||| |||||||||||| | || |||||| Sbjct 1619920 TGACACGATAGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCA 1619861 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||| | |||||||| ||||| || |||||||| ||| || | || ||||| Sbjct 1619860 ACAGAGATTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACTCTGTCTGACTACAA 1619801 Query 29141 TATTCAGAAGGAATCTACT 29159 ||| ||||| ||||||||| Sbjct 1619800 TATCCAGAAAGAATCTACT 1619782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| ||||||| || || || |||||||| ||| ||| ||||| | Sbjct 1620435 ATGCAGATATTCGTCAAAACGTTAACCGGAAAAACCATCACCTTAGAAGTAGAACCATCT 1620376 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| |||||||||||| | || ||||||| Sbjct 1620375 GATACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAA 1620316 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || || | |||||||| ||||| || |||||||| || | ||| | | ||||||| Sbjct 1620315 CAGAGGTTGATCTTTGCAGGCAAGCAGTTGGAAGATGGTCGCACACTGT--CTGATTACA 1620258 Query 29140 ATATTCAGAAGGAATCTAC 29158 |||| ||||| || || || Sbjct 1620257 ATATACAGAAAGAGTCCAC 1620239 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || | || || ||||| ||||| ||| ||||| | Sbjct 1621120 AATGCAGATCTTCGTCAAGACCCTTACAGGAAAAACGATTACACTTGAAGTTGAACCTTC 1621061 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| ||||||||||| | || ||| || Sbjct 1621060 TGACACAATCGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCGCCAGACCA 1621001 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||| | ||||| || || || || | |||||| | ||| | | ||||| || Sbjct 1621000 ACAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAA 1620941 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||||||||| || | || | || || ||||||| Sbjct 1620940 TATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTAAGAGGAGG 1620893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| |||| || ||||| ||||| ||| || ||| | Sbjct 1619296 AATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTC 1619237 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| ||||| ||||| ||||| | || |||||| Sbjct 1619236 TGATACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCA 1619177 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | ||||| ||||| || || || |||||||| | |||| | | |||||||| Sbjct 1619176 GCAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAA 1619117 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||| ||||| || || ||||| Sbjct 1619116 TATTCAAAAGGAGTCCACCCTTCA 1619093 >seq504 Length=327254 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| |||||||| || | ||||| |||||||| ||||| |||||| || ||||| Sbjct 214297 AAATATGCAAATTTTTGTGAAAACTTTGACGGGTAAAACAATTACCCTTGAGGTTGAACC 214238 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | |||| || | | || ||||| ||| || ||||||||||| | || ||| Sbjct 214237 CTCAGACACAATTGAAAATGTTAAGGCAAAGATCCAAGATAAAGAAGGAATTCCTCCAGA 214178 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||| | || ||||| |||||||| || |||||| || | ||||||| Sbjct 214177 TCAGCAAAGATTGATTTTTGCTGGCAAACAGCTAGAAGATGGACGCACCCTTTCCGATTA 214118 Query 29138 CAATATTCAGAA 29149 |||||| ||||| Sbjct 214117 CAATATCCAGAA 214106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428249671154735