Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq1601 136 1e-27 seq3409 132 1e-26 seq10505 111 5e-20 seq2192 111 5e-20 seq2617 80.6 8e-11 >seq1601 Length=30922 Score = 136 bits (150), Expect = 1e-27 Identities = 200/283 (71%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 44762 GTATGGACAGCCAGCCTGCCATGCCAGCCGTGGAGCTCTGCAGGAAAGGGAGGAAAATTT 44821 || ||||||| ||| || |||||||| | ||| | ||||| |||||| |||| Sbjct 15404 GTGTGGACAGGCAGTTGTCCGTGCCAGCCTTTCAGCCCGGCAGGCAAGGGAAAGGGATTT 15345 Query 44822 GATGACGAACGACACCTCTGGCCTGTGTTTTTCAGACTCGTTAAAGAGTGCCGCCCTCCA 44881 | |||||| || | | | ||||| | ||| ||| ||| | | ||||| ||| Sbjct 15344 GCTGACGAGCGGCGCTTATGGCCCGCGTTCTTCCACCTCATCCAGCAGTGCAAACCTGAC 15285 Query 44882 GTCATTTTTGGTGAGCAGGTTTCAAGCAAGGACGGCCTTGAGTGGTTCTCAGCTGTACAA 44941 || || ||||||||||||||| ||||| ||||| || | ||| || |||||| Sbjct 15284 GTTATCTTTGGTGAGCAGGTTGCAAGCCCTGACGGACTCGCTTGGCTCGACCTTGTACAG 15225 Query 44942 ACTGACCTGGAAAATGCGGGCTATGCCGTTGCAGCGCTTGATACATGCGCAGCGAGCGTC 45001 | |||||||||| | | ||| ||| |||||||||||| |||||| ||| || || Sbjct 15224 ATTGACCTGGAAGCAGAGAACTACGCCACAGCAGCGCTTGATTTATGCGCTGCGGGCTTC 15165 Query 45002 GGTGCTCCGCACATCAGACAAAGAATCTTCTGGATGGCCTACG 45044 ||||| ||||||| | ||||| || | | |||| ||||| ||| Sbjct 15164 GGTGCGCCGCACAGCCGACAACGACTTTACTGGGTGGCCGACG 15122 Score = 109 bits (120), Expect = 2e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 45340 CTGGAGAGATATTGACTGGCTCTTCTGCCAGGATGGAAAGTGGAGGCCAGTTGAACCCTC 45399 |||| |||| ||||||||||| ||||| ||||||||| ||| |||||||||||||| Sbjct 14880 CTGGCGAGAGGCTGACTGGCTCTGCTGCCGGGATGGAAAATGGCGGCCAGTTGAACCCGG 14821 Query 45400 ATCATTCCCGCTGGCTGATGGGATTGCCGGTCGAGTGGGCCAGTTGCGCGCCTACGGGAA 45459 || ||||||||||||||||||| || ||||||| | ||||||||||||| || Sbjct 14820 CACACGCCCGCTGGCTGATGGGATTACCAACAGAGTGGGACGACTGCGCGCCTACGGTAA 14761 >seq3409 Length=8325 Score = 132 bits (146), Expect = 1e-26 Identities = 180/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 43038 GATGGCAGCGGCATCTGGACGATATGCCGTGGTGCCACAATGGTTGATGGCAAGCCAGTA 43097 || ||| |||||||||||||||| ||| |||| | ||| ||| ||||||||||| ||| Sbjct 3041 GACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTA 3100 Query 43098 ATGCAGGGCATGAAGTTGA-CGCAGGCCA-AATGCAATCAGGTAAACGCCATCGAAC-GC 43154 || ||||||||||| ||| ||| || || ||||| || | | ||| |||| || Sbjct 3101 GTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAA--AGATTGATGCCGCAGAACAGC 3158 Query 43155 AATAAGGCTCTTGCGTGGGTTGACCGCAATATCAAAGTTCCTCTGACCGAACCGCAGAAA 43214 || ||||| || | ||||| || ||||| | ||||| || || || || | |||||| Sbjct 3159 AA-AAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAA 3217 Query 43215 GCCGGTATCGCATCTTTCTGCCCGTACAACATAGGCCCAGGCAAATGCTTCCCATCGACG 43274 | ||| || || || || || |||| || || || || || || |||||| | || ||| Sbjct 3218 GTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACG 3277 Query 43275 TTCTA 43279 ||||| Sbjct 3278 TTCTA 3282 >seq10505 Length=1270 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45340 CTGGAGAGATATTGACTGGCTCTTCTGCCAGGATGGAAAGTGGAGGCCAGTTGAACCCTC 45399 |||| |||| |||||||||| | |||| ||||| ||||||| |||||||||||||| Sbjct 374 CTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCGGCCAGTTGAACCCGG 433 Query 45400 ATCATTCCCGCTGGCTGATGGGATTGCCGGTCGAGTGGGCCAGTTGCGCGCCTACGGGAA 45459 |||||||||||||| ||||| || || || ||||| | ||||||||||||| || Sbjct 434 CGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGACTGCGCGCCTACGGAAA 493 Query 45460 CGCGAT 45465 ||| || Sbjct 494 CGCTAT 499 >seq2192 Length=16777 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 45340 CTGGAGAGATATTGACTGGCTCTTCTGCCAGGATGGAAAGTGGAGGCCAGTTGAACCCTC 45399 |||| |||| |||||||||| | |||| ||||| ||||||| |||||||||||||| Sbjct 16405 CTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCGGCCAGTTGAACCCGG 16346 Query 45400 ATCATTCCCGCTGGCTGATGGGATTGCCGGTCGAGTGGGCCAGTTGCGCGCCTACGGGAA 45459 |||||||||||||| ||||| || || || ||||| | ||||||||||||| || Sbjct 16345 CGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGACTGCGCGCCTACGGAAA 16286 Query 45460 CGCGAT 45465 ||| || Sbjct 16285 CGCTAT 16280 >seq2617 Length=13952 Score = 80.6 bits (88), Expect = 8e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42984 ATTCTCGACCAGTTTTTGGATGAGAAAGAGGGAAATAGCCTTACTGCTTACAAAGATGGC 43043 ||||| |||| ||| | ||||| |||||||| || | | ||| ||| |||||| Sbjct 3378 ATTCTTGACCGATTTCTTGATGAAAAAGAGGGCAACCATTTAATTGCATACCCAGATGGT 3319 Query 43044 AGCGGCATCTGGACGATATGCCGTGGTGCCACAATGGTTGATGGCAAGCCAGTAATGCAG 43103 | || | |||||||| ||| |||||| || ||| ||||| ||||| ||| || || Sbjct 3318 GGTGGTGTATGGACGATTTGCGGTGGTGTAACGCGGGTAGATGGAAAGCCGGTAGTGAAG 3259 Query 43104 GGCATGAAGTTGAC 43117 ||||||||| |||| Sbjct 3258 GGCATGAAGCTGAC 3245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148249281551178