Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq21 116 4e-21
seq349 111 2e-19
seq75 111 2e-19
seq125 107 2e-18
seq42 105 8e-18
seq57 96.9 4e-15
seq1116 95.1 1e-14
>seq21
Length=2976947
Score = 116 bits (128), Expect = 4e-21
Identities = 76/84 (90%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1416670 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416611
Query 60117 TCACCACTATACTACCGAGGATTG 60140
| ||||||||||||||||||| ||
Sbjct 1416610 TTACCACTATACTACCGAGGACTG 1416587
Score = 114 bits (126), Expect = 1e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1416950 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416891
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1416890 TTACCACTATACTACCGAGGA 1416870
Score = 114 bits (126), Expect = 1e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1417224 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417165
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1417164 TTACCACTATACTACCGAGGA 1417144
Score = 114 bits (126), Expect = 1e-20
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1417498 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417439
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1417438 TTACCACTATACTACCGAGGA 1417418
Score = 111 bits (122), Expect = 2e-19
Identities = 73/81 (90%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1417773 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417714
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1417713 TTACCACTATACTACCGAGGA 1417693
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||| | | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1418074 AAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1418015
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 1418014 TTACCACTATACTACCGAGGA 1417994
>seq349
Length=551398
Score = 111 bits (122), Expect = 2e-19
Identities = 91/109 (83%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 60034 ATAACAACAAATTAACGTTTA--TGAAAAATT---TTCTCCTCGGCAGGGAATCGAACCC 60088
|||||| || |||| |||| ||||||| |||||| |||| |||||||||||||
Sbjct 349512 ATAACATTAATTTAATTTTTACATGAAAAAAAAAATTCTCCCCGGCGGGGAATCGAACCC 349571
Query 60089 TGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137
||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 349572 CGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 349620
>seq75
Length=1867704
Score = 111 bits (122), Expect = 2e-19
Identities = 73/81 (90%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 935338 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 935397
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 935398 TGACCACTATACTACCGAGGA 935418
>seq125
Length=1349911
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 573706 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 573647
Query 60126 TACTACCGAGGATT 60139
||||||||||||||
Sbjct 573646 TACTACCGAGGATT 573633
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 572663 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 572722
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 572723 TACTACCGAGGA 572734
>seq42
Length=2339945
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 2128084 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2128025
Query 60125 ATACTACCGAGGA 60137
|||||||||||||
Sbjct 2128024 ATACTACCGAGGA 2128012
>seq57
Length=2082711
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | || | |||||||| | ||| |||||||||||||||||||||||
Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619584
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || |||| |||||| ||||| || || || |||||||| || | ||
Sbjct 1619585 AGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 1619644
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | || || ||| |||||| || | || | | || || || || ||
Sbjct 1619645 ATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACT 1619704
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || || ||||| || || || || || ||||| |||||||||
Sbjct 1619705 TCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1619752
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | || ||||| | ||| |||||||||||||||||||||||
Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1620496
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || | |||||| ||||| || || || |||||||| || | ||
Sbjct 1620497 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1620556
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | ||||| ||| |||||| ||| | | | | || || | |||||
Sbjct 1620557 ATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACT 1620616
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || || ||||| || || || || || ||||| |||||||||
Sbjct 1620617 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1620664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | || ||||| | ||| |||||||||||||||||||||||
Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619128
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || | |||||| ||||| || || || |||||||| || | ||
Sbjct 1619129 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1619188
Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099
| | ||||| ||| ||||||
Sbjct 1619189 ATTCCTTCCTTATCCTGGATTTT 1619211
>seq1116
Length=48232
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119
|||| |||| |||| |||||||||| || |||||||||||||||||||||| ||||| |
Sbjct 32670 AATTGGCTCCCCGGCGGGGAATCGAATCCCGGTCTCCCGCGTGACAGGCGGAGATACTGA 32611
Query 60120 CCACTATACTAC 60131
||||||||||||
Sbjct 32610 CCACTATACTAC 32599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571699398154360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |