Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21 116 4e-21 seq349 111 2e-19 seq75 111 2e-19 seq125 107 2e-18 seq42 105 8e-18 seq57 96.9 4e-15 seq1116 95.1 1e-14 >seq21 Length=2976947 Score = 116 bits (128), Expect = 4e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1416670 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416611 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 1416610 TTACCACTATACTACCGAGGACTG 1416587 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1416950 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1416891 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1416890 TTACCACTATACTACCGAGGA 1416870 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1417224 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417165 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1417164 TTACCACTATACTACCGAGGA 1417144 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1417498 AAAAATTATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417439 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1417438 TTACCACTATACTACCGAGGA 1417418 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1417773 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1417714 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1417713 TTACCACTATACTACCGAGGA 1417693 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1418074 AAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1418015 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1418014 TTACCACTATACTACCGAGGA 1417994 >seq349 Length=551398 Score = 111 bits (122), Expect = 2e-19 Identities = 91/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 60034 ATAACAACAAATTAACGTTTA--TGAAAAATT---TTCTCCTCGGCAGGGAATCGAACCC 60088 |||||| || |||| |||| ||||||| |||||| |||| ||||||||||||| Sbjct 349512 ATAACATTAATTTAATTTTTACATGAAAAAAAAAATTCTCCCCGGCGGGGAATCGAACCC 349571 Query 60089 TGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 349572 CGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 349620 >seq75 Length=1867704 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 935338 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 935397 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 935398 TGACCACTATACTACCGAGGA 935418 >seq125 Length=1349911 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 573706 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 573647 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 573646 TACTACCGAGGATT 573633 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 572663 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 572722 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 572723 TACTACCGAGGA 572734 >seq42 Length=2339945 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2128084 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 2128025 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 2128024 ATACTACCGAGGA 2128012 >seq57 Length=2082711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||||||| | ||| ||||||||||||||||||||||| Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619584 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||| ||||| || || || |||||||| || | || Sbjct 1619585 AGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 1619644 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || || ||| |||||| || | || | | || || || || || Sbjct 1619645 ATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACT 1619704 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 1619705 TCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1619752 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | || ||||| | ||| ||||||||||||||||||||||| Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1620496 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||| ||||| || || || |||||||| || | || Sbjct 1620497 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1620556 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| ||| |||||| ||| | | | | || || | ||||| Sbjct 1620557 ATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACT 1620616 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 1620617 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCATT 1620664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | || ||||| | ||| ||||||||||||||||||||||| Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619128 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||| ||||| || || || |||||||| || | || Sbjct 1619129 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1619188 Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099 | | ||||| ||| |||||| Sbjct 1619189 ATTCCTTCCTTATCCTGGATTTT 1619211 >seq1116 Length=48232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| |||| |||| |||||||||| || |||||||||||||||||||||| ||||| | Sbjct 32670 AATTGGCTCCCCGGCGGGGAATCGAATCCCGGTCTCCCGCGTGACAGGCGGAGATACTGA 32611 Query 60120 CCACTATACTAC 60131 |||||||||||| Sbjct 32610 CCACTATACTAC 32599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571699398154360