Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq57 138 2e-27 seq252 129 9e-25 seq504 113 7e-20 >seq57 Length=2082711 Score = 138 bits (152), Expect = 2e-27 Identities = 114/139 (82%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| ||||| | ||| | ||||| |||||||||||| ||||||||||||| Sbjct 1620891 TTCCTCCTCTTAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTG 1620950 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || ||| ||||| || ||||| || || || |||||||| || || || | Sbjct 1620951 AAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGCG 1621010 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 1621011 GAATTCCTTCTTTATCTTG 1621029 Score = 134 bits (148), Expect = 2e-26 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| |||||| | || | ||| || || || ||||| || |||||||| ||| Sbjct 1618841 CCTCCTCGAAGTCTAAGGACAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAA 1618900 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| | ||| || || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 1618901 AGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGG 1618960 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||||| ||| ||||||| Sbjct 1618961 ATTCCTTCCTTATCTTGAATCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTACT 1619020 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || ||||| |||||||| ||||| | |||||| ||||| Sbjct 1619021 TCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| ||||| | ||| | ||||| |||||||||||| ||||||||||||| Sbjct 1620663 TTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTG 1620722 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || ||| ||||| || ||||| || || || |||||||| || || || | Sbjct 1620723 AAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTG 1620782 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||||||||| || Sbjct 1620783 GAATTCCTTCTTTATCCTG 1620801 Score = 125 bits (138), Expect = 1e-23 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| |||| | |||||||| || || || || || |||||| ||||| | Sbjct 1621119 TTCCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGG 1621178 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || || || |||||||||||||| |||| ||||||||| |||| Sbjct 1621179 ATAGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAG 1621238 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| |||||||| |||||||||| || | Sbjct 1621239 GGATTCCTTCCTTATCTTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAA 1621298 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| || || ||||| || || || || ||||| | ||| || |||||||| Sbjct 1621299 CTTCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCATTTT 1621350 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| ||||| | ||| | ||||| ||| |||||||| ||||||||||||| Sbjct 1619295 TTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATATTATAATCTG 1619354 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | || ||| |||| || ||||| || || || || ||||| || || || | Sbjct 1619355 AGAGAGTGCGGCCATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGTTGGTCTGGTG 1619414 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 1619415 GAATTCCTTCTTTATCTTG 1619433 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||||||| |||| ||| | |||||||||||||||||| ||||| || || | Sbjct 1619751 TTCCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAG 1619810 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| || || || || || ||||| |||||||| || ||||| || | Sbjct 1619811 ACAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTG 1619870 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 1619871 GAATACCTTCTTTATCTTG 1619889 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | |||||||| || || || ||||| |||||| ||||| | Sbjct 1620207 TTCCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAG 1620266 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || || || || || ||||| ||||| || || ||||| || | Sbjct 1620267 ACAGTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTG 1620326 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||||||||| ||||| || ||||| Sbjct 1620327 GAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTA 1620386 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| ||||| ||||| || ||||| ||||| | |||||| ||||| Sbjct 1620387 CTTCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| || | | |||||||| | || || || ||| || ||||| ||||| || Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGA-ATATTGTAATCAGA 1619583 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| || ||| ||||| || |||||||||||||| | | |||||||| || || Sbjct 1619584 TAGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1619643 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 1619644 AATTCCTTCTTTATCCTG 1619661 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | | ||| | ||| | ||||||||| ||||| || ||||||||||||| Sbjct 1618611 TTCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTG 1618670 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || |||||||| || || |||||||| |||||||| || || | Sbjct 1618671 ACAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTG 1618730 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| Sbjct 1618731 GTATTCCTTCCTTGTCTTG 1618749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||||||||| | | || ||||| | || || | |||| || ||||| ||||| || Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGA-ATATTGTAATCAGA 1619127 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| || ||| || || || |||||||||||||| | | |||||||| || || Sbjct 1619128 TAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1619187 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 |||||||| ||||| || |||||| || || || Sbjct 1619188 GATTCCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAAC 1619247 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||| || || |||||||| || || | ||||| | ||| ||||||||| Sbjct 1619248 TTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCATT 1619296 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||||||||| | | || ||||| | || || | |||| || ||||| ||||| || Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGA-ATATTGTAATCAGA 1620495 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||| || ||| || || || |||||||||||||| | | |||||||| || || Sbjct 1620496 TAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGG 1620555 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 1620556 GATTCCTTCCTTATCCTG 1620573 >seq252 Length=802098 Score = 129 bits (142), Expect = 9e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| | ||||| ||||||||||||||||| ||| |||||||| ||| Sbjct 443916 CCTCCTCTTAGTCTGAGCACCAAGTGTAAAGTAGATTCTTTTTGTATGTTATAATCAGAA 443857 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||||| |||| || || || || || |||||||| ||||| |||||||| ||||| Sbjct 443856 AGAGTTCTGTTATCTTCCAACTGCTTACCGGCAAAAATTAATCTCTGCTGATCAGGAGGT 443797 Query 146171 ATTCCT 146176 |||||| Sbjct 443796 ATTCCT 443791 >seq504 Length=327254 Score = 113 bits (124), Expect = 7e-20 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| ||||| || | | ||| |||| ||||| |||||||||||||||||| Sbjct 214112 ATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTT 214171 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||||||||||||||| Sbjct 214172 TGCTGATCTGGAGGAATTCCTTCTTTATCTTG 214203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743372703799040