Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq33 152 5e-32 >seq33 Length=2490231 Score = 152 bits (168), Expect = 5e-32 Identities = 157/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| ||| ||||||||||||||| |||||||| ||||| || || |||| || Sbjct 181704 TTTCTTTGGAATCCCGAATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACAT 181645 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAG 16606 | |||||||| || || ||||| ||||| ||||| ||||| | || ||| ||||| || Sbjct 181644 TTTCCATTGCAATTTGGAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGAC 181585 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 | |||||| || |||||||||| ||||| |||||||| || ||||| || || | | Sbjct 181584 T-AAACCTCTCAACTAAGTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAAT 181526 Query 16667 ATGTGTTTAATAAAAtttttttC 16689 | || |||||||| |||||| Sbjct 181525 ACATGAGAAATAAAATGTTTTTC 181503 Score = 104 bits (114), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT-- 15942 |||||||||| | || || ||| ||| | |||| ||| | ||| || || | Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTAC--ACCTGC 184204 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| |||||||| | |||| |||||||||||||||||||||||||||| | ||| |||| Sbjct 184203 TTTCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATG 184144 Query 16003 TTCCATAAAATCAAAAGGATTTT 16025 |||||| || ||||| ||||||| Sbjct 184143 TTCCATGAAGTCAAATGGATTTT 184121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTT 16314 |||| || ||| || || || || ||||| ||||| |||||||||| ||||| ||| Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAA--GTAAGCCCTGGCATTAATCCTCTTTT 182593 Query 16315 TTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAA 16374 || | |||||||||||| ||||| |||||| || |||| ||||| || || ||||| Sbjct 182592 CTTTAACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAA 182533 Query 16375 TGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatt 16434 |||| | || || | | || | | ||| ||||||| |||||| | Sbjct 182532 AGCAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTC 182473 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAT 16484 ||||||| || ||||| | || |||| ||||||||||| | ||||| Sbjct 182472 AGCTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATAAT 182423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462416392988200