Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq33 116 4e-21 >seq33 Length=2490231 Score = 116 bits (128), Expect = 4e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||| ||| | ||| || ||||| || | |||||||| ||||||| ||| | Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAA--GTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||||||||||||| || || || || || || |||| || || || |||||||| | Sbjct 182590 TTAACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAG 182531 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | || |||| |||| | || | || || ||||||| |||||| |||| Sbjct 182530 CAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAG 182471 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||||| || | | |||||| || ||||| |||||||| Sbjct 182470 CTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAA 182431 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| || ||||| || ||||| || ||||| |||||||| | |||||||| || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCA 14591 ||||| ||||||||||| ||||| | ||| || ||| || |||| || || | | Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAAC-CTCTCAACTA 181570 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 | ||||||||||| || |||||| || ||||| || ||||||| | |||||| | Sbjct 181569 AGTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAAT 181510 Query 14652 ATTGCTCTTCA 14662 || |||||| Sbjct 181509 GTTTTTCTTCA 181499 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| | | ||| | ||||||| | || ||||| | || || || ||| Sbjct 184259 TAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTTTC 184200 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| | |||| | ||||||||||| || ||||| |||||||||||||||| |||| Sbjct 184199 TGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTTCC 184140 Query 13976 ATAAAATCAAATGGATTT 13993 || || |||||||||||| Sbjct 184139 ATGAAGTCAAATGGATTT 184122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482245893135160