Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq57 96.9 3e-15 >seq57 Length=2082711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||| ||| ||| || || | ||| ||||| | || | |||||||| || ||||| || Sbjct 1618605 TTTAGTT-TCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTA 1618663 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 || || | || || || ||||||||||||||| || || | || | ||||| || Sbjct 1618664 TAATCTGACAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGG 1618723 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACC 18268 || || | |||||||| || ||||| | || || || | | ||| ||||||| Sbjct 1618724 TCAGGTGGTATTCCTTCCTTGTCTTGAATTT-TCGCTTTCACATTTTCAATAGTGTCAGA 1618782 Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || ||| |||| || ||||| ||||| ||||| |||||||| Sbjct 1618783 TGGTTCAACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || |||||||| ||||| || | | ||| | ||||||||| || Sbjct 1620461 TGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGC 1620520 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | ||||| | || ||||| || | ||||||||||| |||| | Sbjct 1620521 TTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTT-T 1620579 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| ||| |||||| ||||| || || |||| || || Sbjct 1620580 GGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTTCCAGT 1620639 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || ||||| ||||||||||||||| Sbjct 1620640 CAGAGTTTTCACAAAAATTTGCATT 1620664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || |||||||| ||||| || | | ||| | ||||||||| || Sbjct 1619093 TGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGC 1619152 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | ||||| | || ||||| || | ||||||||||| |||| | Sbjct 1619153 TTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTT-T 1619211 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| ||| |||||| ||||| || || |||| || || Sbjct 1619212 GGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTTCCAGT 1619271 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || ||||| || |||||||||||| Sbjct 1619272 CAGAGTTTTCACGAAAATTTGCATT 1619296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||||||| || | || | |||||| ||||| |||||||| || || | Sbjct 1618841 CCTCCTCGAAGTCTAAGGACAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAA 1618900 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||||||| ||||| || || | || | ||||| ||||| || Sbjct 1618901 AGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGG 1618960 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | || || || | | ||| || ||| || || Sbjct 1618961 ATTCCTTCCTTATCTTGAATCT-TAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTAC 1619019 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || || ||||| || || || ||||| Sbjct 1619020 TTCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379267545232065