Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq57 96.9 3e-15
>seq57
Length=2082711
Score = 96.9 bits (106), Expect = 3e-15
Identities = 166/237 (70%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149
||| ||| ||| || || | ||| ||||| | || | |||||||| || ||||| ||
Sbjct 1618605 TTTAGTT-TCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTA 1618663
Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209
|| || | || || || ||||||||||||||| || || | || | ||||| ||
Sbjct 1618664 TAATCTGACAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGG 1618723
Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACC 18268
|| || | |||||||| || ||||| | || || || | | ||| |||||||
Sbjct 1618724 TCAGGTGGTATTCCTTCCTTGTCTTGAATTT-TCGCTTTCACATTTTCAATAGTGTCAGA 1618782
Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || ||||| || ||| |||| || ||||| ||||| ||||| ||||||||
Sbjct 1618783 TGGTTCAACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || |||||||| ||||| || | | ||| | ||||||||| ||
Sbjct 1620461 TGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGC 1620520
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| | ||||| | || ||||| || | ||||||||||| |||| |
Sbjct 1620521 TTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTT-T 1620579
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | | ||| ||| ||| |||||| ||||| || || |||| || ||
Sbjct 1620580 GGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTTCCAGT 1620639
Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326
|| ||||| |||||||||||||||
Sbjct 1620640 CAGAGTTTTCACAAAAATTTGCATT 1620664
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || || || |||||||| ||||| || | | ||| | ||||||||| ||
Sbjct 1619093 TGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGC 1619152
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| | ||||| | || ||||| || | ||||||||||| |||| |
Sbjct 1619153 TTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTT-T 1619211
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| || || | | ||| ||| ||| |||||| ||||| || || |||| || ||
Sbjct 1619212 GGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTTCCAGT 1619271
Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326
|| ||||| || ||||||||||||
Sbjct 1619272 CAGAGTTTTCACGAAAATTTGCATT 1619296
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || |||||||| || | || | |||||| ||||| |||||||| || || |
Sbjct 1618841 CCTCCTCGAAGTCTAAGGACAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAA 1618900
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||| ||||| || || | || | ||||| ||||| ||
Sbjct 1618901 AGAGTTCGACCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGG 1618960
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| ||| | | || || || | | ||| || ||| || ||
Sbjct 1618961 ATTCCTTCCTTATCTTGAATCT-TAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTAC 1619019
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||| || |||| || || || ||||| || || || |||||
Sbjct 1619020 TTCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379267545232065
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |