Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq57 122 8e-23 seq126 96.9 3e-15 seq33 96.9 3e-15 >seq57 Length=2082711 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| |||| || ||||| || || | || |||||||| || Sbjct 1618839 ATGCAAATATTTGTGAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTTGAACCATCT 1618780 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || ||| || ||| ||||||||||| | || || |||||| Sbjct 1618779 GACACTATTGAAAATGTGAAAGCGAAAATTCAAGACAAGGAAGGAATACCACCTGACCAG 1618720 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| |||||||| | || || |||||||| Sbjct 1618719 CAAAGGTTGATTTTCGCAGGGAAACAATTGGAAGATGGTCGCACCTTGTCAGATTATAAT 1618660 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| ||| | ||||| ||||| ||| || | ||||| Sbjct 1618659 ATTCAGAAGGAATCAACTTTACATCTAGTACTGAGATTGCGTGGCGG 1618613 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || |||||||| || ||||| || || | || ||||| || || Sbjct 1619295 ATGCAAATTTTCGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTTGAGCCCTCT 1619236 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| ||| |||||||| | || || || ||| Sbjct 1619235 GATACTATTGAAAATGTTAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAG 1619176 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| ||| | ||||| || Sbjct 1619175 CAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAAT 1619116 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || |||||| | || ||| | || || || |||| Sbjct 1619115 ATTCAAAAGGAGTCCACCCTTCATTTAGTTCTTCGTCTTAGAGGTGGTA 1619067 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || ||||| || ||||| || || | || ||||| ||||| Sbjct 1620891 ATGCAAATTTTTGTAAAAACCCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCA 1620832 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| ||| || ||||| | || |||||||| Sbjct 1620831 GATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCCGACCAA 1620772 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || || ||||| ||||| ||| | |||||||| Sbjct 1620771 CAAAGATTAATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTTTCAGATTATAAT 1620712 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| ||||| ||||| ||||| |||||||| || || Sbjct 1620711 ATTCAGAAAGAATCTACTCTACATCTTGTACTCAGACTGAGAGGAGG 1620665 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| | ||||| |||||||| ||| | || || ||||| || Sbjct 1619067 ATGCAGATATTCGTGAAAACTTTAACAGGAAAAACGATTACCTTAGAAGTAGAACCTTCT 1619008 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || || |||||||| | || ||||| ||| Sbjct 1619007 GATACAATTGAAAATGTAAAAGCTAAGATTCAAGATAAGGAAGGAATCCCTCCCGATCAG 1618948 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || |||||||| |||||||||||||| | ||| | ||||||||| Sbjct 1618947 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGTCGAACTCTTTCTGATTATAAC 1618888 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || | ||||| || |||||||| | || |||| Sbjct 1618887 ATTCAGAAAGAGTCAACATTGCATCTTGTCCTTAGACTTCGAGGAGGTA 1618839 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || |||||||| || ||||| || || | || || || || || Sbjct 1620663 ATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACAATTACTCTTGAAGTGGAGCCCTCT 1620604 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| ||| |||||||| | || || || ||| Sbjct 1620603 GATACTATTGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATCCCACCAGATCAG 1620544 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||||||||| ||| | ||||| || Sbjct 1620543 CAGCGTCTTATTTTTGCTGGAAAGCAGTTGGAAGATGGCCGAACTCTATCTGATTACAAT 1620484 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || |||||| | || ||| | || || || |||| Sbjct 1620483 ATTCAAAAGGAGTCCACCCTTCATTTAGTTCTTCGTCTTAGAGGTGGTA 1620435 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| ||||| || || || || | || || ||||| || Sbjct 1620207 ATGCAGATCTTCGTTAAGACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 1620148 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || || || |||||||| | || || |||||| Sbjct 1620147 GACACAATTGAAAATGTAAAAGCGAAGATTCAAGATAAGGAAGGAATACCACCTGACCAG 1620088 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || |||||||| |||||||| ||||| || | ||||| || Sbjct 1620087 CAAAGGTTGATTTTCGCTGGGAAACAGTTAGAAGATGGGCGCACCCTTTCTGATTACAAT 1620028 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| ||||||||||| || | |||||||| || || Sbjct 1620027 ATTCAGAAAGAATCAACTCTTCATCTTGTCTTAAGACTGAGAGGAGG 1619981 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || |||||||| || ||||| || || | || ||||| ||||| Sbjct 1619751 ATGCAAATTTTTGTGAAAACTCTGACTGGAAAAACTATTACTCTTGAAGTTGAGCCGTCT 1619692 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| ||| || ||||| | || || || ||| Sbjct 1619691 GATACAATAGAGAACGTAAAGGCTAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAG 1619632 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||||| ||||| ||| | ||||| || Sbjct 1619631 CAGCGTCTTATTTTTGCTGGAAAGCAGTTAGAAGATGGCCGAACTCTATCTGATTACAAT 1619572 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || |||||| |||| ||| | || || || |||| Sbjct 1619571 ATTCAAAAGGAGTCCACCCTTCATTTGGTTCTTCGGCTCAGAGGGGGTA 1619523 >seq126 Length=1333976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 |||||||| || || || ||||| | | | ||| || || | || |||||||| || Sbjct 1331856 ACTTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTCAAAT 1331915 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 ||||||||||| || |||||||| || || ||||| || ||||| || || | || | Sbjct 1331916 GATTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAGCAAG 1331975 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGTCCCACAGAT 22637 || ||||||| || || | | |||||| | ||| |||| | ||||||||| || Sbjct 1331976 GAATTTCTCAGACCATGTTCGGCAATTTTTCGCTTCAAAGCA--GTCCAGTCCCAGAGTG 1332033 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 || || || ||||| |||||| || || || || Sbjct 1332034 TGGTTGGTGTTACATT---CCACATGTCATACTGTAA 1332067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23722 AGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTA 23781 ||||| || | ||||| ||||| || ||||| || || || ||||| ||||| Sbjct 1318416 AGACAACTGTGGCTTGGGTGTAGCTGCATTGAACATCGTAGGTGATGCATGCGTGAAGTA 1318357 Query 23782 TCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACC 23841 || | |||||| |||||||| || || ||||| || ||||| || || ||||| ||||| Sbjct 1318356 ACCTTCCGACATCAGATTGTAAGTCTCTATGGCTGCGTCAATATCATCGCCGTGAATACC 1318297 Query 23842 GATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTG 23899 | || || | ||||| ||| | ||||| | || || | | | | | ||||| Sbjct 1318296 CACAGCAACCCTCATCAACATATGCTGAGGGCGTTCCACTACTTTAT--CATGGATTTTT 1318239 Query 23900 AACAGATATGAACGTTGCA 23918 || | ||||||||||| || Sbjct 1318238 AATAAATATGAACGTTCCA 1318220 >seq33 Length=2490231 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 |||||| || | | || || ||| |||||||| || ||||| |||||||| | || Sbjct 181168 TGAACCTCTACTTCGTGAAAACCCCAAAAGATTTGTGATATTTCCAATTGAATACCATGA 181227 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || ||| | ||||||||||| |||||||| || |||||||| || |||||||| || || Sbjct 181228 TATATGGCAAATGTACAAAAAAGCAGAAGCGTCTTTTTGGACGGTTGAAGAAGTTGATCT 181287 Query 57629 GTCTAAGG 57636 || |||| Sbjct 181288 TTCAAAGG 181295 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 || ||||| || || || || | || || || || || || ||||| |||| || || Sbjct 182503 ACTGCCACTTTTGCAGAAAGAATTATTGCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCT 182562 Query 58014 GGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTT 58073 || ||||||||||| ||||||||| | |||||| | || | ||||| || || || || Sbjct 182563 GGTAGCTTTGCGGCTATATTTTGGTTAAAGAAAAGAGGATTAATGCCAGGGCTTACTTTC 182622 Query 58074 AGCAACGAGTTGATATC 58090 ||||| || ||||| || Sbjct 182623 AGCAATGAATTGATTTC 182639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445674254513040