Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1601 228 3e-55 >seq1601 Length=30922 Score = 228 bits (252), Expect = 3e-55 Identities = 384/547 (70%), Gaps = 9/547 (2%) Strand=Plus/Plus Query 22936 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22995 |||||||| ||||| || || ||||| || | || || | |||||||| ||| ||| Sbjct 8271 CCCTGGATAGGCGGTAAACGGCGACTGGCAAAACAGATTTTACCGCGCTTCCCGGCGCAT 8330 Query 22996 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-GACCGCCAGC 23054 ||| ||||| ||| || |||| ||||||||| | ||| ||| | |||| Sbjct 8331 ACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTTACCCAGT 8390 Query 23055 CAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCA 23114 ||| |||||||| ||||||||||||||||||||||| || || ||||| || | | Sbjct 8391 AAGGCG-GAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTGCTGAA 8449 Query 23115 GCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTT 23174 |||||||| |||||||| |||| ||||| |||||||||||| |||||| | ||| Sbjct 8450 ACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTA 8509 Query 23175 CGAGTGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACATCCAG-CGTGCGGCACGCT 23233 | ||| | || |||| | || ||| | ||||| | || || ||||| | | Sbjct 8510 TCAATGGTTAAACATTACGCCGACCGAGACCTTAACCGATAGGAAGCCGCGCGGCCTGTT 8569 Query 23234 TCTACTACCTGCAAAAA-AGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACG 23292 |||| |||||||||||| || | || ||||| || | | | || || ||||| | Sbjct 8570 TCTATTACCTGCAAAAACAGGCG-TTCGGCGGTAAAGTCGCCGAACACACCTTCGGCATT 8628 Query 23293 GCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCG 23352 || || || | | ||| ||||||||||||| ||||| ||||| ||||| ||| || Sbjct 8629 GCCACCACCAGAGGGCCACGCCTGAACCTGCTACGCATGGAAGAGGAGCTGTCGCTCGCT 8688 Query 23353 CACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGATC 23410 || | || | || || | | ||| || | |||||||| | |||||||| | | Sbjct 8689 CATCTGCGATTGTCACGCA--CCACCATTGAACAAATCGATTGGTCAACCTGCATTGCCC 8746 Query 23411 GTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGGT 23470 |||| || || ||||||||||| || ||| ||| |||||||| | | ||||| || | Sbjct 8747 GTTATGACCGTCCGCACACGCTCTTTTACTGTGACCCGCCGTATTGGGGTACTGAGGGCT 8806 Query 23471 ACGGCGT 23477 | ||||| Sbjct 8807 ATGGCGT 8813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170638483965990