Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq33 131 2e-25 seq126 89.7 6e-13 >seq33 Length=2490231 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 || ||||||||| || | | ||| ||||| || || |||| ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAA 33967 || ||||| |||||||| || || || | || |||||| || ||| | || |||| Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||||| || ||||||||| ||| ||||| || ||||||||||| ||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 34077 |||||| || ||| | | || |||||| || | ||| | | ||| || Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGAC---ATAACTCCCATTT 33291 ||||||| || | | ||||| |||| | | ||||||| ||| || || || || Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTT 184202 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || ||||| || || ||||| || ||||| ||||||||||||| |||||||| || Sbjct 184201 TCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTT 184142 Query 33352 CCATGAAATCAAACGGATT 33370 ||||||| ||||| ||||| Sbjct 184141 CCATGAAGTCAAATGGATT 184123 >seq126 Length=1333976 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||||||| ||||| || || ||||||| ||| || || || ||||| || || | | Sbjct 1317146 CACTAAATGTCTTTTTGGTCTCTTTGTGTAAATTAGAAATTGCAATTCTAGCTGCCAATA 1317087 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | ||| |||||||||||| ||||| || || || | || || || | | | |||| Sbjct 1317086 TAGCAAAATCCGGATGTTTGGTAGTCATTGTAGCAGCAGTCTCCGCAGCTAAATTATCCA 1317027 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTAT 64177 |||| || ||||| |||||| |||| ||| || || ||||||| ||| Sbjct 1317026 ATTCCACGGTTGTGACTCCAGGGTATAGTCCACTTATTACTTTCATAGTTAT 1316975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629687408829360