Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq33 131 2e-25
seq126 89.7 6e-13
>seq33
Length=2490231
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907
|| ||||||||| || | | ||| ||||| || || |||| ||||| || || || ||
Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629
Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAA 33967
|| ||||| |||||||| || || || | || |||||| || ||| | || ||||
Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569
Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027
|||||||| || ||||||||| ||| ||||| || ||||||||||| |||||||
Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509
Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 34077
|||||| || ||| | | || |||||| || | ||| | | ||| ||
Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/139 (75%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGAC---ATAACTCCCATTT 33291
||||||| || | | ||||| |||| | | ||||||| ||| || || || ||
Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTT 184202
Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351
| || ||||| || || ||||| || ||||| ||||||||||||| |||||||| ||
Sbjct 184201 TCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTT 184142
Query 33352 CCATGAAATCAAACGGATT 33370
||||||| ||||| |||||
Sbjct 184141 CCATGAAGTCAAATGGATT 184123
>seq126
Length=1333976
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065
|||||||| ||||| || || ||||||| ||| || || || ||||| || || | |
Sbjct 1317146 CACTAAATGTCTTTTTGGTCTCTTTGTGTAAATTAGAAATTGCAATTCTAGCTGCCAATA 1317087
Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125
| ||| |||||||||||| ||||| || || || | || || || | | | ||||
Sbjct 1317086 TAGCAAAATCCGGATGTTTGGTAGTCATTGTAGCAGCAGTCTCCGCAGCTAAATTATCCA 1317027
Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTAT 64177
|||| || ||||| |||||| |||| ||| || || ||||||| |||
Sbjct 1317026 ATTCCACGGTTGTGACTCCAGGGTATAGTCCACTTATTACTTTCATAGTTAT 1316975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629687408829360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |