Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq6242 96.9 9e-16 seq2617 93.3 1e-14 seq3708 84.2 6e-12 >seq6242 Length=2873 Score = 96.9 bits (106), Expect = 9e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 8064 TTACCTGTTTGAAGGAGAACAAGGTAAGCGCGACAGCATCATTGTCGTCGCACAGCTCTG 8123 ||||| ||||| || |||||||||||||| |||||||||||||| ||||| || || | Sbjct 490 TTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTTGTCGCCCAACTTTC 431 Query 8124 CCCTGGATTCACTGCTCGCTTGGTAGATCGCTGGCGCGAACTGGAA 8169 ||| | ||| || || | || |||||||| |||| ||||||||| Sbjct 430 CCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385 Score = 82.4 bits (90), Expect = 2e-11 Identities = 159/221 (72%), Gaps = 14/221 (6%) Strand=Plus/Minus Query 9511 GCACCTTATAAAGCGGGTGCCGGGATTGGAACCCCGGAATTGCTCGA--GGCGATATACG 9568 |||||| ||| | |||||||||||| ||| ||| | || || | |||| ||| Sbjct 1757 GCACCTGCAAAATCAGGTGCCGGGATTCGAAACCCCGGATAACTAAACAGGCGC-ATAAC 1699 Query 9569 ACGCGC-CAGCGTCTTTTTT-AT-CGTCCATGCTCGCGCACGCCAGAATTATGGTGGGCT 9625 |||| |||||| |||||| || |||| | | | || | |||| |||||||||| Sbjct 1698 ACGCCTACAGCGTGTTTTTTTATGCGTCGGTCCGC---CATATCTGAATAATGGTGGGCT 1642 Query 9626 GGGCAGGGGAGCCGAAAGGCTCGCC-GGTTTCCTTGAGCGCCGGTAG-TTCCAACCCTGT 9683 || ||||||||| |||||||||| ||| |||| |||||||| ||| |||||||| Sbjct 1641 GGATGGGGGAGCCGCAAGGCTCGCCGGGTCTCCTGTTTAGCCGGTAGTTTCGAACCCTGT 1582 Query 9684 TCAGTCCGCCACC-AGCGAGCTT-GGAACCTC-CGGTGGTG 9721 |||| | || || | ||| || | |||||| ||||||| Sbjct 1581 TCAGCTCACCGCCAAATGAGATTCGAAACCTCTAGGTGGTG 1541 >seq2617 Length=13952 Score = 93.3 bits (102), Expect = 1e-14 Identities = 150/204 (74%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 9526 GGTGCCGGGATTGGAACCCCGGAATTGCT--CGAGGCGATATACGACGCGC-CAGCGTCT 9582 ||||||||| ||| |||||||| | || | ||||| ||| |||| |||||| | Sbjct 1209 GGTGCCGGGTTTGAGACCCCGGA-TAACTAACAAGGCGC-ATAACACGCCTACAGCGTGT 1266 Query 9583 TTTTT-AT-CGTCCATGCTCGCGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGA 9640 ||||| || |||| | | | || |||||| |||||||||||| ||||||||| Sbjct 1267 TTTTTTATGCGTCAGTCCGC---CATATCAGAATAATGGTGGGCTGGATGGGGGAGCCGC 1323 Query 9641 AAGGCTCGCCGGTTTCCTTGAGCGCCGGTAGTTCCAACCCTGTTCAGTCCGCCACCA--G 9698 |||||||||||| |||||| ||||||||| ||||||| |||||| | || ||| Sbjct 1324 AAGGCTCGCCGG-GTCCTTGTTAGCCGGTAGTCTCAACCCTATTCAGTTCACCGCCAATA 1382 Query 9699 CGAGCTTGGAACCTC-CGGTGGTG 9721 ||| ||| ||||| ||||||| Sbjct 1383 TGAGTTTGAGACCTCTAGGTGGTG 1406 >seq3708 Length=7132 Score = 84.2 bits (92), Expect = 6e-12 Identities = 146/203 (72%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 9526 GGTGCCGGGATTGGAACCCCGGAATTGCT--CGAGGCGATATACGACGCGC-CAGCGTCT 9582 ||||||||| || | |||||||| | || | ||||| ||| |||| |||||| | Sbjct 905 GGTGCCGGGTTTAGTACCCCGGA-TAACTAACAAGGCGC-ATAACACGCCTACAGCGTGT 962 Query 9583 TTTTTATCGTCCATGCTCGCGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGAAA 9642 ||||| || | ||| || |||||| |||||| ||||| ||||||||| || Sbjct 963 TTTTTTATGTGTCAGTCCGC-CATATCAGAATAATGGTGAGCTGGATGGGGGAGCCGCAA 1021 Query 9643 GGCTCGCCGGTTTCCTTGAGCGCCGGTAGTTCCAACCCTGTTCAGTCCGCCACC--AGCG 9700 |||||||||| |||||| |||||| || | |||||| | ||| ||||||| | | Sbjct 1022 GGCTCGCCGG-ATCCTTGTTAGCCGGTCGTACTAACCCTATCCAGCTCGCCACCATACAG 1080 Query 9701 AGCTTGGAACCTC--CGGTGGTG 9721 ||||| | ||||| ||||||| Sbjct 1081 AGCTTAGTACCTCTAGGGTGGTG 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136091669493978