Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq126 114 1e-20 seq33 98.7 9e-16 >seq126 Length=1333976 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 || ||||| ||||||||||| || |||||||| || ||||| ||||| | ||||||| Sbjct 1331856 ACTTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTCAAAT 1331915 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || ||||| || | | ||| || | |||||| || |||||||||||||||| ||| | | Sbjct 1331916 GATTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAGCAAG 1331975 Query 37258 CTATTTCTCAATCCATGT 37275 |||||||| |||||| Sbjct 1331976 GAATTTCTCAGACCATGT 1331993 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 |||||||| || || ||| | | ||| | ||||||| ||| | |||| || ||||| Sbjct 1332391 CCTTTACTAGCCGGTGAACCTTCATAAGAATCATAAGTTCCATGTATTTGTGCAAGTTCA 1332450 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 || |||| ||||| || ||||||||||||||||||| || ||| | || || || Sbjct 1332451 CAGCTAGCTTCTAAAGCTCCATAATATATTGTTTCGAAGATCTGTTTGTTCAACTCTTGA 1332510 Query 37474 GCTTCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAAC 37532 || ||| || || |||| || || || ||||| | |||||||| || || || Sbjct 1332511 GCGCGTTCACTTTCAAATG-GTATCCTCATCTGGATAAAAAGATCAGCCAGTCCTTGTAC 1332569 Query 37533 ACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 ||| ||||| || ||||| || | |||| ||||| Sbjct 1332570 ACCAATACCGATCGGTCTGTGCAACATATTTGATCT 1332605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 || ||||||| || ||| || || | || || || | ||||| |||||||| || Sbjct 1318421 CACCTAGACAACTGTGGCTTGGGTGTAGCTGCATTGAACATCGTAGGTGATGCATGCGTG 1318362 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 || | |||||||| ||| || || ||||| | | || |||||| |||||||| Sbjct 1318361 AAGTAACCTTCCGACATCAGATTGTAAGTCTCTATGGCTGCGTCAATATCATCGCCGTGA 1318302 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGT 38568 ||||| | || |||||||| | |||||| || || | ||| | || ||||| || | Sbjct 1318301 ATACCCACAGCAACCCTCATCAACATATGCTGAGGGCGTTCCACTACTTTATCATGGATT 1318242 Query 38569 TTAAGTAGATACGATTTTTCTAATGT 38594 || | || ||| || ||| ||||| Sbjct 1318241 TTTAATAAATATGAACGTTCCAATGT 1318216 >seq33 Length=2490231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| |||||| || | |||||| || || | || ||||| ||||||| ||| | Sbjct 182650 CTTCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| |||||||||||| ||||| |||||| || |||| || |||||||| ||||| | Sbjct 182590 TTAACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAG 182531 Query 11772 CTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAG 11828 | | | ||||||| || | | | || || ||||||| ||||| |||| Sbjct 182530 CAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAG 182471 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||| || || || || |||| || || || || ||||| Sbjct 182470 CTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAA 182431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468427950067280