Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq3708 120 7e-23 seq1653 102 2e-17 >seq3708 Length=7132 Score = 120 bits (132), Expect = 7e-23 Identities = 238/351 (68%), Gaps = 1/351 (0%) Strand=Plus/Minus Query 13562 GGGGAAAACATCCTTTCCTGCGATACGGAGAAGAGTATCCGGGAGCGTTTTTCTGTTTAC 13621 || ||||| || || |||| |||||||| |||||||||| || || ||||| | || Sbjct 2404 GGAGAAAATATTCTCACCTGTGATACGGAACAGAGTATCCGCGAACGCTTTTCGGAATAT 2345 Query 13622 CAGGTGGCGGGGCAGCGTGCCGGAAACGACGATGATTTCGGTGAGGCCACCACCACCGCG 13681 ||||||||||| || || | ||| | || | |||| |||||| ||||| || || Sbjct 2344 CAGGTGGCGGGTCAACGCTCGGGAGATGATGCTGATCACGGTGAAGCCACGCTAACGGCA 2285 Query 13682 CTGCGGGCCCGCACAGAGGACGCATTTATTGCCCGTTACCGTCCGATGTATATCAGGCAG 13741 ||||| ||| | | | ||| ||| | || || || ||| ||||| ||| Sbjct 2284 CTGCGAGCCAGAGCCAAAGACAGCCAGATTACGCGCTATCGCCCGCAACATATCCACCAG 2225 Query 13742 ACAGGGCAGGCTACGGGGGCAGGCTGTATTGCGCGTGCTGACTTTGAAGCCCGACAACGG 13801 | || | | || || || ||||| || || ||| ||||||||| |||| | Sbjct 2224 GCCGGTAATACAACCGGAGCCAGCTGTCGCGCTCGCAGTGAATTTGAAGCCAGACAGTGT 2165 Query 13802 GCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGCGACAGGGTAACGGTACG 13861 || || | || || ||||| |||||| || || || | ||| || ||| |||| | Sbjct 2164 GCAGCCAGAACCGAGGAAACGACCTATACAGTACAAGGTTAGCGGCAAGGTGACGGCAGC 2105 Query 13862 CTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCGGT-CTGTGGTTT 13911 || ||| ||| || || || || ||||| ||||||||||| ||| | ||| Sbjct 2104 CTCTGGAAGCATAATCAACGCGTCATTGTGTTTGATCCGGTGCTGGGCTTT 2054 >seq1653 Length=29478 Score = 102 bits (112), Expect = 2e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 20721 GTCTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAAC 20780 ||| |||| | || |||||||| | |||| |||| | ||||| || || | || Sbjct 556 GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTAC 497 Query 20781 CATTTCGATAGACTCCCAGCCTCCCATTTCCTGTAACACTGACAACGGGACTCCGGCTTG 20840 ||| |||||| ||||||||| |||||||| || || | |||| || || || | || Sbjct 496 CATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACTG 437 Query 20841 ACCCAGCCAACTTGCCCAGGTGTGTCTCAAGTCGTGAAATCTGAAATCA 20889 | | | ||||||||||||||| |||| || || ||||||||||| ||| Sbjct 436 AACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTCA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118491926355384