Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq57 102 8e-17
seq33 89.7 5e-13
>seq57
Length=2082711
Score = 102 bits (112), Expect = 8e-17
Identities = 146/201 (73%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625
|| |||||||| |||||||||||||| | || |||| ||||| | |||||| |
Sbjct 1618871 GTTGACTCTTTCTGAATGTTATAATCAGAAAGAGT--TCGACCATCTTCCAACTGTTTCC 1618928
Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-T 139684
|||| | |||| | ||||||||||||||| || ||||| || || ||| | || | |
Sbjct 1618929 CAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATC-TTGAATCTTAGCT 1618987
Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744
|||| | ||| | ||| || | || || || || | ||| | ||| || || || ||
Sbjct 1618988 TTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAA 1619047
Query 139745 GTTTTTACGAATATTTGCATA 139765
||||| |||||||| ||||||
Sbjct 1619048 GTTTTCACGAATATCTGCATA 1619068
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCT 139612
||| || || | ||| ||||| || || || || |||||| || | | ||| |||
Sbjct 1621138 AACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGG--ATAGGGTACGACCATCT 1621195
Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672
|| | ||| || |||||| | || | ||||||||||| ||||| || ||||| || ||
Sbjct 1621196 TCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGGGATTCCTTCCTTATC- 1621254
Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731
||| |||| | |||| | ||| | || || | ||||| || |||| || | ||
Sbjct 1621255 TTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAACTTCAAGAGTTATTGT 1621314
Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| || ||||||||||||||||| || |||||
Sbjct 1621315 CTTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || || | || |||| || | || || || || ||||| |||||||| |
Sbjct 1618613 CCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1618672
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| | ||||| || || | |||| | |||||| || || |||
Sbjct 1618673 AAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGT 1618732
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| |||| | ||| | || || | ||||| | || || ||
Sbjct 1618733 ATTCCTTCCTTGTCT-TGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAAC 1618791
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|||| || | || || || ||||| ||||| || |||||||||||| ||
Sbjct 1618792 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCATACCT 1618843
>seq33
Length=2490231
Score = 89.7 bits (98), Expect = 5e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTT 52614
|||||| ||||| | ||| ||||| ||| |||||||| | | |||||||||
Sbjct 182455 TGTGTGAAGAAAAAAGCTGACTGGGCTTTGGAATGGATCTCCTCTAAGACTGCCACTTTT 182514
Query 52615 GCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCG 52674
|| ||| | | | || |||||| |||||||| || ||||| || ||||| ||||||
Sbjct 182515 GCAGAAAGAATTATTGCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCTGGTAGCTTTGCG 182574
Query 52675 GCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTG 52734
|| ||||||| | || | || ||||||| || || || || ||||| || |||
Sbjct 182575 GCTATATTTTGGTTAAAGAAAAGAGGATTAATGCCAGGGCTTACTTTCAGCAATGAATTG 182634
Query 52735 ATATCGCGCGACGAAGGAA 52753
|| || | || |||| ||
Sbjct 182635 ATTTCTAGAGATGAAGTAA 182653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495961457370400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |