Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq57 102 8e-17 seq33 89.7 5e-13 >seq57 Length=2082711 Score = 102 bits (112), Expect = 8e-17 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 || |||||||| |||||||||||||| | || |||| ||||| | |||||| | Sbjct 1618871 GTTGACTCTTTCTGAATGTTATAATCAGAAAGAGT--TCGACCATCTTCCAACTGTTTCC 1618928 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-T 139684 |||| | |||| | ||||||||||||||| || ||||| || || ||| | || | | Sbjct 1618929 CAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATC-TTGAATCTTAGCT 1618987 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 |||| | ||| | ||| || | || || || || | ||| | ||| || || || || Sbjct 1618988 TTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAA 1619047 Query 139745 GTTTTTACGAATATTTGCATA 139765 ||||| |||||||| |||||| Sbjct 1619048 GTTTTCACGAATATCTGCATA 1619068 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCT 139612 ||| || || | ||| ||||| || || || || |||||| || | | ||| ||| Sbjct 1621138 AACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGG--ATAGGGTACGACCATCT 1621195 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | ||| || |||||| | || | ||||||||||| ||||| || ||||| || || Sbjct 1621196 TCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGGGATTCCTTCCTTATC- 1621254 Query 139673 GTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| |||| | |||| | ||| | || || | ||||| || |||| || | || Sbjct 1621255 TTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAACTTCAAGAGTTATTGT 1621314 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || ||||||||||||||||| || ||||| Sbjct 1621315 CTTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || || | || |||| || | || || || || ||||| |||||||| | Sbjct 1618613 CCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1618672 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||||| || || | |||| | |||||| || || ||| Sbjct 1618673 AAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGT 1618732 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | || || | ||||| | || || || Sbjct 1618733 ATTCCTTCCTTGTCT-TGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAAC 1618791 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | || || || ||||| ||||| || |||||||||||| || Sbjct 1618792 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCATACCT 1618843 >seq33 Length=2490231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTT 52614 |||||| ||||| | ||| ||||| ||| |||||||| | | ||||||||| Sbjct 182455 TGTGTGAAGAAAAAAGCTGACTGGGCTTTGGAATGGATCTCCTCTAAGACTGCCACTTTT 182514 Query 52615 GCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCG 52674 || ||| | | | || |||||| |||||||| || ||||| || ||||| |||||| Sbjct 182515 GCAGAAAGAATTATTGCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCTGGTAGCTTTGCG 182574 Query 52675 GCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTG 52734 || ||||||| | || | || ||||||| || || || || ||||| || ||| Sbjct 182575 GCTATATTTTGGTTAAAGAAAAGAGGATTAATGCCAGGGCTTACTTTCAGCAATGAATTG 182634 Query 52735 ATATCGCGCGACGAAGGAA 52753 || || | || |||| || Sbjct 182635 ATTTCTAGAGATGAAGTAA 182653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495961457370400