Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq33 131 2e-25
seq126 109 8e-19
>seq33
Length=2490231
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285
|| ||||||||| || | | ||| ||||| || || |||| ||||| || || || ||
Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629
Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAA 50345
|| ||||| |||||||| || || || | || |||||| || ||| | ||| ||||
Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569
Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405
|||||||| || ||||| ||| ||| ||||| || ||||||||||| ||||||||
Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509
Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 50455
|||||| | ||| | | || |||||| || | ||| | | ||| ||
Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459
Score = 87.8 bits (96), Expect = 3e-12
Identities = 154/224 (69%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| |||||| ||| | ||| ||| || || || || ||||||| || | || ||
Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
| ||||||||| | |||||| ||||| || || | ||||| || || ||||| |||
Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529
Query 50104 ACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCC 50160
| || ||| ||| || || |||| | | | ||||| | |||||| || ||
Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469
Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204
|| || || |||||| || || || || ||||||||||||||
Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425
Score = 87.8 bits (96), Expect = 3e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGAC---ATAACTCCCATTT 49669
||||||| || | | || || |||| | | ||||||| ||| || || || ||
Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTT 184202
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
| || ||||| || || ||||| || ||||| ||||||||||||| |||||||| ||
Sbjct 184201 TCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTT 184142
Query 49730 CCATGAAATCAAACGGATT 49748
||||||| ||||| |||||
Sbjct 184141 CCATGAAGTCAAATGGATT 184123
>seq126
Length=1333976
Score = 109 bits (120), Expect = 8e-19
Identities = 129/172 (75%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| ||||||||||||||| |||| ||| |||| | || || || ||||| | ||
Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
| | ||||| ||||||||| || ||||| || ||||| |||||||||| || || |
Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC-TTAATATCTTCTGGAA 78955
| |||| ||||||||| | ||||| |||| | || || | ||| || ||||
Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAA-TAGCTTTTAAATCATCCGGAA 1329884
Score = 89.7 bits (98), Expect = 7e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922
|||||| || ||||||||||| |||| || || | | | |||||||||||||||||
Sbjct 1321521 GAACTCCTCGCCCCAAACATCTGCTAAGCCTGGCGACACATGTGGACACATCAACGACCA 1321462
Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 79981
| |||| || ||||||| |||||| |||||||||||||| | || ||| || |
Sbjct 1321461 TACACCATTTGACTCAACTCGTTCCATAAAAAGATCAGGAATCCATAATGC-ATAGAAAA 1321403
Query 79982 GATCTCTGGTTCT 79994
||||||| | |||
Sbjct 1321402 GATCTCTAGCTCT 1321390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718120324860680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |