Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq33 131 2e-25 seq126 109 8e-19 >seq33 Length=2490231 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285 || ||||||||| || | | ||| ||||| || || |||| ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAA 50345 || ||||| |||||||| || || || | || |||||| || ||| | ||| |||| Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||||| || ||||| ||| ||| ||||| || ||||||||||| |||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 50455 |||||| | ||| | | || |||||| || | ||| | | ||| || Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459 Score = 87.8 bits (96), Expect = 3e-12 Identities = 154/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || |||||| ||| | ||| ||| || || || || ||||||| || | || || Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 | ||||||||| | |||||| ||||| || || | ||||| || || ||||| ||| Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529 Query 50104 ACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCC 50160 | || ||| ||| || || |||| | | | ||||| | |||||| || || Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 || || || |||||| || || || || |||||||||||||| Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGAC---ATAACTCCCATTT 49669 ||||||| || | | || || |||| | | ||||||| ||| || || || || Sbjct 184261 TTTAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTT 184202 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || ||||| || || ||||| || ||||| ||||||||||||| |||||||| || Sbjct 184201 TCTGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTT 184142 Query 49730 CCATGAAATCAAACGGATT 49748 ||||||| ||||| ||||| Sbjct 184141 CCATGAAGTCAAATGGATT 184123 >seq126 Length=1333976 Score = 109 bits (120), Expect = 8e-19 Identities = 129/172 (75%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||||||||||| |||| ||| |||| | || || || ||||| | || Sbjct 1329714 TCCACCCGTAGAAATGCATAGAAGTTAATTTTCCATAATTTGGTTCAGCAATATGTACAT 1329773 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||||| ||||||||| || ||||| || ||||| |||||||||| || || | Sbjct 1329774 TTAAGGATTGTGATTGATCGATAAATGCTCCTCTATCTGCTGCCATTTTTAATATAGTTT 1329833 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC-TTAATATCTTCTGGAA 78955 | |||| ||||||||| | ||||| |||| | || || | ||| || |||| Sbjct 1329834 TCTGTGAAATTTCCCACACTGTTTTGTAAA-TAGCTTTTAAATCATCCGGAA 1329884 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 |||||| || ||||||||||| |||| || || | | | ||||||||||||||||| Sbjct 1321521 GAACTCCTCGCCCCAAACATCTGCTAAGCCTGGCGACACATGTGGACACATCAACGACCA 1321462 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 79981 | |||| || ||||||| |||||| |||||||||||||| | || ||| || | Sbjct 1321461 TACACCATTTGACTCAACTCGTTCCATAAAAAGATCAGGAATCCATAATGC-ATAGAAAA 1321403 Query 79982 GATCTCTGGTTCT 79994 ||||||| | ||| Sbjct 1321402 GATCTCTAGCTCT 1321390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718120324860680