Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq33 114 1e-20
>seq33
Length=2490231
Score = 114 bits (126), Expect = 1e-20
Identities = 160/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
||| || ||||| || ||||| || ||||| |||||||| | ||||| || || || ||
Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629
Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCA 14047
||||| ||||||||||| ||||| | ||| || || || | ||| || || | |
Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACT-AAACCTCTCAACTA 181570
Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107
|||||||||||||||| |||||| || ||||| || ||||||| | |||||| |
Sbjct 181569 AGTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAAT 181510
Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149
|| |||||| || | | |||||| |||||||||
Sbjct 181509 GTTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCT 181468
Score = 113 bits (124), Expect = 4e-20
Identities = 158/220 (72%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 13684 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
||||||||| ||| | ||| || ||||| || | |||||||| ||||||| ||| |
Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAA--GTAAGCCCTGGCATTAATCCTCTTTTCT 182591
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
||||||||||||| || || || || || || |||| || || || |||||||| |
Sbjct 182590 TTAACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAG 182531
Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861
| || | || |||| |||| | || | || || ||||||| |||||| ||||
Sbjct 182530 CAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAG 182471
Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901
|||||| || | | |||||| || || |||||||| ||
Sbjct 182470 CTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAA 182431
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371
|||||||| | | ||| | ||||||| | || ||||| | || || || |||
Sbjct 184259 TAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTTTC 184200
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
|||||||| | |||| | |||||||| || || ||||| |||||||||||||||| ||||
Sbjct 184199 TGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTTCC 184140
Query 13432 ATAAAATCGAATGGATTT 13449
|| || || |||||||||
Sbjct 184139 ATGAAGTCAAATGGATTT 184122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478489869712680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |