Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq33 114 1e-20 >seq33 Length=2490231 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| || ||||| || ||||| || ||||| |||||||| | ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCA 14047 ||||| ||||||||||| ||||| | ||| || || || | ||| || || | | Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACT-AAACCTCTCAACTA 181570 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||||||||| |||||| || ||||| || ||||||| | |||||| | Sbjct 181569 AGTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAAT 181510 Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 || |||||| || | | |||||| ||||||||| Sbjct 181509 GTTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCT 181468 Score = 113 bits (124), Expect = 4e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||| ||| | ||| || ||||| || | |||||||| ||||||| ||| | Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAA--GTAAGCCCTGGCATTAATCCTCTTTTCT 182591 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||||||||| || || || || || || |||| || || || |||||||| | Sbjct 182590 TTAACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAG 182531 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | || | || |||| |||| | || | || || ||||||| |||||| |||| Sbjct 182530 CAATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAG 182471 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| || | | |||||| || || |||||||| || Sbjct 182470 CTTTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAA 182431 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| | | ||| | ||||||| | || ||||| | || || || ||| Sbjct 184259 TAAAAATCCGCTTGTAAAGTAAAAACACTTTCTTCTTTTGACGCCATTACACCTGCTTTC 184200 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | |||| | |||||||| || || ||||| |||||||||||||||| |||| Sbjct 184199 TGATATTCTCCAACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCCAGTGATATATGTTCC 184140 Query 13432 ATAAAATCGAATGGATTT 13449 || || || ||||||||| Sbjct 184139 ATGAAGTCAAATGGATTT 184122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478489869712680