Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq33 131 2e-25
seq126 96.9 5e-15
>seq33
Length=2490231
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390
|| ||| ||||| || | | ||| ||||| || || |||| ||||| || || || ||
Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629
Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAA 42450
|| ||||| |||||||| || || || || || |||||| || ||| | ||| ||||
Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569
Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510
||||| || || ||||| ||| ||| ||||| || ||||||||||| |||||||
Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509
Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATAT 42560
|||||| || ||| | || || |||||| || | ||| | | ||| ||
Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459
Score = 107 bits (118), Expect = 3e-18
Identities = 93/114 (82%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604
||| |||| || | ||| |||||||| ||||||||||| || |||||||| ||||| |||
Sbjct 181298 ATACCTTT-GAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTAC 181240
Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658
|| | ||| |||||||| |||| |||||| || || |||||||| || || |||
Sbjct 181239 ATTTGCCATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTT 181186
Score = 105 bits (116), Expect = 9e-18
Identities = 158/224 (71%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
||||||||| ||| ||||| ||| || || || || ||||||| || | || ||
Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208
| ||||||||||| |||||| ||||| || || | ||||| || || ||||| |||
Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529
Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCC 42265
|||| ||| ||| || || |||| | | | ||||| | |||||| || ||
Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469
Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309
|| || || |||||| || || || || ||||||||||||||
Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425
>seq126
Length=1333976
Score = 96.9 bits (106), Expect = 5e-15
Identities = 144/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418
|| |||||||| ||| ||| |||| | ||| || | ||| | | ||| || ||||||
Sbjct 1332391 CCTTTACTAGCCGGTGAACCTTCATAAGAATCATAAGTTCCATGTATTTGTGCAAGTTCA 1332450
Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT 71478
|| || || ||||| ||||||||||| || |||||||| |||| || || | |||||
Sbjct 1332451 CAGCTAGCTTCTAAAGCTCCATAATATATTGTTTCGAAGATCTGTTTGTTCAACTCTTGA 1332510
Query 71479 GC---TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535
|| ||| || |||||||| | | | ||||| || || | ||||||
Sbjct 1332511 GCGCGTTC---ACTTTCAAATGGTATCCTCATCTGGATAAAAAGATCAGCCAGTCCTTGT 1332567
Query 71536 ACGCCAATACCGATAGGTCTGTG 71558
|| ||||||||||| ||||||||
Sbjct 1332568 ACACCAATACCGATCGGTCTGTG 1332590
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198
|| |||||||||||||||||| || || || | ||||| ||||| | ||| |||||||
Sbjct 1331852 AATTACTTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTC 1331911
Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258
| ||| ||||| || || | || || || || || || || ||||| ||||| | |
Sbjct 1331912 AAATGATTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAG 1331971
Query 71259 TAGACTATTTCTAAGACCATGT 71280
| |||||| |||||||||
Sbjct 1331972 CAAGGAATTTCTCAGACCATGT 1331993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671000467138120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |