Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq33 131 2e-25 seq126 96.9 5e-15 >seq33 Length=2490231 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 || ||| ||||| || | | ||| ||||| || || |||| ||||| || || || || Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAA 42450 || ||||| |||||||| || || || || || |||||| || ||| | ||| |||| Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACTAAACCTCTCAACTAA 181569 Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 ||||| || || ||||| ||| ||| ||||| || ||||||||||| ||||||| Sbjct 181568 GTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAATG 181509 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATAT 42560 |||||| || ||| | || || |||||| || | ||| | | ||| || Sbjct 181508 TTTTTCTTCAGGTTTCAACCTAGTCCAATGATCTAAATCCTAAAATAAAT 181459 Score = 107 bits (118), Expect = 3e-18 Identities = 93/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 ||| |||| || | ||| |||||||| ||||||||||| || |||||||| ||||| ||| Sbjct 181298 ATACCTTT-GAAAGATCAACTTCTTCAACCGTCCAAAAAGACGCTTCTGCTTTTTTGTAC 181240 Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || | ||| |||||||| |||| |||||| || || |||||||| || || ||| Sbjct 181239 ATTTGCCATATATCATGGTATTCAATTGGAAATATCACAAATCTTTTGGGGTTT 181186 Score = 105 bits (116), Expect = 9e-18 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||||||| ||| ||||| ||| || || || || ||||||| || | || || Sbjct 182648 TCATCTCTAGAAATCAATTCATTGCTGAAAGTAAGCCCTGGCATTAATCCTCTTTTCTTT 182589 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 | ||||||||||| |||||| ||||| || || | ||||| || || ||||| ||| Sbjct 182588 AACCAAAATATAGCCGCAAAGCTACCAGAGAAAAATACGCCTTCCACAGCAGCAAAAGCA 182529 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCC 42265 |||| ||| ||| || || |||| | | | ||||| | |||||| || || Sbjct 182528 ATAATTCTTTCTGCAAAAGTGGCAGTCTTAGAGGAGATCCATTCCAAAGCCCAGTCAGCT 182469 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 || || || |||||| || || || || |||||||||||||| Sbjct 182468 TTTTTCTTCACACAATCCAGAGTCTCAATTGCATTAAAGAGATA 182425 >seq126 Length=1333976 Score = 96.9 bits (106), Expect = 5e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || |||||||| ||| ||| |||| | ||| || | ||| | | ||| || |||||| Sbjct 1332391 CCTTTACTAGCCGGTGAACCTTCATAAGAATCATAAGTTCCATGTATTTGTGCAAGTTCA 1332450 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT 71478 || || || ||||| ||||||||||| || |||||||| |||| || || | ||||| Sbjct 1332451 CAGCTAGCTTCTAAAGCTCCATAATATATTGTTTCGAAGATCTGTTTGTTCAACTCTTGA 1332510 Query 71479 GC---TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535 || ||| || |||||||| | | | ||||| || || | |||||| Sbjct 1332511 GCGCGTTC---ACTTTCAAATGGTATCCTCATCTGGATAAAAAGATCAGCCAGTCCTTGT 1332567 Query 71536 ACGCCAATACCGATAGGTCTGTG 71558 || ||||||||||| |||||||| Sbjct 1332568 ACACCAATACCGATCGGTCTGTG 1332590 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || |||||||||||||||||| || || || | ||||| ||||| | ||| ||||||| Sbjct 1331852 AATTACTTGAAATTCTCCAGATAAGACCCTTCTTGTGTACATATTTGTAGTAAACGGTTC 1331911 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | ||| ||||| || || | || || || || || || || ||||| ||||| | | Sbjct 1331912 AAATGATTCATTGTTGCCAAGTATCTGCGCTGTAGAAGCTGTAGGCATTGGTGCTAGTAG 1331971 Query 71259 TAGACTATTTCTAAGACCATGT 71280 | |||||| ||||||||| Sbjct 1331972 CAAGGAATTTCTCAGACCATGT 1331993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671000467138120