Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq57 102 8e-17 >seq57 Length=2082711 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || | || |||| ||| | || ||||| || || || || ||||| | Sbjct 1618613 CCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1618672 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||| || || | |||| | |||||| || || ||| Sbjct 1618673 AAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGT 1618732 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | ||||| ||| Sbjct 1618733 ATTCCTTCCTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAACT 1618792 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || || ||||| ||||| || |||||||||||| || Sbjct 1618793 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCATACCT 1618843 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||| ||||| | || || ||||| ||||| |||||||| | Sbjct 1620209 CCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGAC 1620268 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | || || || ||| |||||| | || ||||| || || Sbjct 1620269 AGTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGGA 1620328 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||||||| Sbjct 1620329 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTACT 1620388 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || ||||| || ||||| |||||||| |||||| Sbjct 1620389 TCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCATA 1620436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCT 143032 ||| ||||| | || || || || ||||| ||||||||| || | | ||| ||| Sbjct 1621138 AACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGG--ATAGGGTACGACCATCT 1621195 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | || || |||||| | || | ||||||||||| ||||| || ||||| || || Sbjct 1621196 TCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGGGATTCCTTCCTTATCT 1621255 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| |||| | ||| | || || | || || ||||||| ||| | ||| Sbjct 1621256 TGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGCTCAACTTCAAGAGTTATTGTC 1621315 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||| ||||||||||| || ||||| Sbjct 1621316 TTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||||||||||| || || || ||||| || ||||||| | Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAAT--CAG 1619126 Query 143018 ATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| ||||| | || || |||||| | || ||||| |||||||| || | Sbjct 1619127 ATAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTG 1619186 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| || || ||||| ||| | | ||| | || || | ||| || | Sbjct 1619187 GGATTCCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAA 1619246 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || || || |||| ||||| ||||| |||||||| Sbjct 1619247 CTTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCAT 1619295 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | ||||||||||| || || || ||||| || ||||||| | Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAAT--CAG 1620494 Query 143018 ATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| ||||| | || || |||||| | || ||||| |||||||| || | Sbjct 1620495 ATAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTG 1620554 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| || || ||||| ||||| | ||| | || || | ||| || | Sbjct 1620555 GGATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCA 1620614 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || || || |||| ||||| || || |||||||| Sbjct 1620615 CTTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1620663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | | || | ||| | ||| || ||||| || ||||| ||||| Sbjct 1618841 CCTCCTCGAAGTCTAAGGACAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAA 1618900 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| | ||||| ||||| | |||| | |||||||||||||| Sbjct 1618901 AGAGT--TCGACCATCTTCCAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAG 1618958 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| || || ||| || ||||| | ||| | || || | ||||||| Sbjct 1618959 GGATTCCTTCCTTATCTTGAATCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTA 1619018 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | || | ||| || || || || ||||| |||||||| |||||| Sbjct 1619019 CTTCTAAGGTAATCGTTTTTCCTGTTAAAGTTTTCACGAATATCTGCATA 1619068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || | ||||| || |||||||| || || |||||||| | |||| | ||| Sbjct 1619996 AAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATCAGAAAGGGTGCGCCCATCT 1620055 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||||| ||||| | |||| | |||||| || || ||||| ||||| || || Sbjct 1620056 TCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGGTGGTATTCCTTCCTTATCT 1620115 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 ||| || ||||| | ||| | ||||| | ||||||||||||| ||| | ||| Sbjct 1620116 TGAATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTCTACTTCAAGAGTAATAGTC 1620175 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | || || ||||| || ||||| Sbjct 1620176 TTTCCTGTAAGAGTCTTAACGAAGATCTGCAT 1620207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506909593785840