Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq7786 188 2e-43 >seq7786 Length=1398 Score = 188 bits (208), Expect = 2e-43 Identities = 241/332 (73%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 38686 GATGAAGTACCCAACAGTTATTGTCAATGGTGTGTCCGTTCGTGTTGATGAGGACGGACG 38745 |||| | || ||||| || || || ||||| ||||| ||||||||||||| || || || Sbjct 1259 GATGCAATATCCAACGGTAATAGTAAATGGCGTGTCTGTTCGTGTTGATGGCGAAGGGCG 1200 Query 38746 CTACAACTTAAACGATCTTCATGCAGCAGCAGTTGCAAATGGCGAGGCAACTGAATCTCA 38805 ||||||| | |||||||||||||| || || ||| || || ||||| | ||| ||||| Sbjct 1199 CTACAACCTGAACGATCTTCATGCCGCCGCCGTTCTTAACGGTGAGGCTAATGAGTCTCA 1140 Query 38806 ACGCCCCAGTAATTTTCTGAGGAGTGCACAGATTAAACGGTTCATTTCAGCACTAAAAGC 38865 ||||| || ||| | | ||||| ||| | ||| ||||||| || || || || Sbjct 1139 GCGCCCGAGCCTTTTCATTCGTAGTGCTCAGGTAAAAAGGTTCATAAAGGCGCTTAAGGC 1080 Query 38866 CAAAGCTCAAAAAAGAGCTTTGAAAGAAATTCAACCACTTAAAGTAATAAAGGGTGGGGT 38925 |||||| ||||||||||||||| || ||| |||||| ||| | | || ||| Sbjct 1079 CAAAGCGCAAAAAAGAGCTTTGGAACAAAATCAACCTCTTGGCATCGTGCGCGGCGGGAA 1020 Query 38926 TGATTCTGGTGTGTGGGGTGTTGAACTACTGGCAATCAGATATGCAGCATGGATTAAGCC 38985 | | || | |||||||| || | ||||| || | ||||| |||||||||||||| Sbjct 1019 TAGCCCAGGCATCTGGGGTGTCGAGTTGCTGGCTATACGCTATGCGGCATGGATTAAGCC 960 Query 38986 GGAATTTGAAATCGAAGTTTATGAAGTTTTCA 39017 ||| || || ||| | ||||| | | ||||| Sbjct 959 GGAGTTCGAGATCAATGTTTACGCAACTTTCA 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128329994006934