Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq57 131 1e-25 seq504 114 9e-21 >seq57 Length=2082711 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| || ||||| || |||||||| |||| ||| | ||||| Sbjct 1619542 AACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTC 1619601 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| || || ||||| | || | ||| || || || ||||||||||||||| || Sbjct 1619602 TAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTATCCTG 1619661 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| |||||| | ||||| ||||| || || || | ||||| ||||| Sbjct 1619662 GATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACTTCAAGAGTAATAGTTTT 1619721 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| |||||||||||||| Sbjct 1619722 TCCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | |||||||||||||||||| || ||||| || |||||||| | Sbjct 1620437 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1620496 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | ||||| || || || ||||| | || | ||| || || || ||| Sbjct 1620497 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1620556 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| |||||| |||| || ||||| || || Sbjct 1620557 ATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACT 1620616 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 1620617 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1620663 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | |||||||||||||||||| || ||||| || |||||||| | Sbjct 1619069 CCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGAT 1619128 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | ||||| || || || ||||| | || | ||| || || || ||| Sbjct 1619129 AGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGG 1619188 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| || ||| |||| || ||||| || || Sbjct 1619189 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACT 1619248 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| ||||| || ||||||||||| || ||||||||||| Sbjct 1619249 TCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCAT 1619295 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| ||| | || | ||| || || || ||||| || || || ||||| Sbjct 1620665 CCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTGAA 1620724 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||| || || || ||| | || || | |||||||||| |||| Sbjct 1620725 AGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTGGA 1620784 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||||| |||||| | ||||| ||||| || || Sbjct 1620785 ATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCTGACGGCTCAACT 1620844 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 1620845 TCAAGAGTAATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCAT 1620891 Score = 118 bits (130), Expect = 8e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || ||||| || ||||| ||||| ||| ||| | ||||| || ||||| ||| Sbjct 1618871 GTTGACTCTTTCTGAATGTTATAATCAGAAAGAGTTCGACCATCTTCCAACTGTTTCCCA 1618930 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTT 15285 ||| | ||||| | ||| || ||| || |||||||| || || ||| || ||| || Sbjct 1618931 GCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTGAATCTTAGCT-TT 1618989 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 |||| |||| || ||||| | |||||| ||||||||||| ||||| ||||| | ||| Sbjct 1618990 TACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTCCTGTTAAAGT 1619049 Query 15346 TTTTACAAAAATTTGCATA 15364 ||| || || || |||||| Sbjct 1619050 TTTCACGAATATCTGCATA 1619068 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| ||| | || | ||| || || || ||||| || || || ||||| Sbjct 1619297 CCTCCTCTCAGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATATTATAATCTGAG 1619356 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| || || || ||| | || || | ||||||||| |||| Sbjct 1619357 AGAGTGCGGCCATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGTTGGTCTGGTGGA 1619416 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||||||| ||| ||| |||| || || || ||| || Sbjct 1619417 ATTCCTTCTTTATCTTGAATTTTGGCCTTAACATTTTCGATAGTGTCAGATGGTTCAACT 1619476 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||| || ||||| ||||| || ||||| || |||||| Sbjct 1619477 TCAAGTGTAATGGTCTTTCCTGTAAGAGTCTTCACAAAGATCTGCATA 1619524 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | |||||| | |||| ||| | || || || || || || || ||||| | Sbjct 1618613 CCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATC--TG 1618670 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || || | ||||| |||||||| || ||| | ||||| | ||| ||||| || Sbjct 1618671 ACAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTG 1618730 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCT 15313 | |||||||| ||||| |||||| | |||| ||| |||| || || || ||| Sbjct 1618731 GTATTCCTTCCTTGTCTTGAATTTT-CGCTTTCACATTTTCAATAGTGTCAGATGGTTCA 1618789 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||||||||||| || |||| |||||| ||||| ||||||||| Sbjct 1618790 ACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCATA 1618840 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| | || | ||| || || || ||||| || || || ||||| Sbjct 1620893 CCTCCTCTTAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATCTGAA 1620952 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||| || || || ||| | || || | ||||||||| ||| Sbjct 1620953 AGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCTGGCGGA 1621012 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || |||||| ||| ||| |||| || || || | ||| || Sbjct 1621013 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCGATTGTGTCAGAAGGTTCAACT 1621072 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| ||||| ||||| || || || || || || ||||| Sbjct 1621073 TCAAGTGTAATCGTTTTTCCTGTAAGGGTCTTGACGAAGATCTGCAT 1621119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | |||| || | ||| | || || ||||| || || ||||| || Sbjct 1619753 CCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAGAC 1619812 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || || ||||| || | ||||| | ||||| || |||| Sbjct 1619813 AGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTGGA 1619872 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| ||| || ||| ||||||| || || ||| || Sbjct 1619873 ATACCTTCTTTATCTTGAATTTTAGCT-TTCACATTTTCTATCGTGTCAGACGGTTCCAC 1619931 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||||||||| || || || | || || ||||| || ||||| Sbjct 1619932 TTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCAT 1619979 >seq504 Length=327254 Score = 114 bits (126), Expect = 9e-21 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 15171 AATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15230 || |||| || || ||||||||| || | | | ||||||| ||||||||||| Sbjct 214101 AACCTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAA 214160 Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACA 15289 | ||||| | ||| || || |||||||||||||| || || ||||| ||| ||| Sbjct 214161 AAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGC-CTTAACA 214219 Query 15290 ATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15349 |||| || || || ||| || || | |||||| |||||||| |||| |||||| Sbjct 214220 TTTTCAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTC 214279 Query 15350 ACAAAAATTTGCATATTTGAAA 15371 |||||||||||||||||| ||| Sbjct 214280 ACAAAAATTTGCATATTTTAAA 214301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362106204706317