Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq1601 244 3e-60 seq10505 230 6e-56 seq2192 223 9e-54 seq6037 120 8e-23 >seq1601 Length=30922 Score = 244 bits (270), Expect = 3e-60 Identities = 357/500 (71%), Gaps = 10/500 (2%) Strand=Plus/Minus Query 34031 GCCTACTACAACGAAATCGACCAATTTGCAGCTCAATGGCTGCGTAACCTGATCGCCGGC 34090 |||| || ||||| | |||| | || | || |||||||| |||||||| |||| | Sbjct 15614 GCCTGGTATAACGACACTGACCCCTATGTGGGGCAGTGGCTGCGAAACCTGATGGCCGCC 15555 Query 34091 GGTCATATCGCGCCAGGCGAAGTTGACGAAAGGAGTATTGAAGATGTCACACCTGACGAC 34150 || ||||| ||||| || || || || ||| | || || || | | ||| || || Sbjct 15554 GGGCATATTGCGCCTGGTGATGTCGATGAACGTTCAATCGAGGAGATTAAACCCGATGAG 15495 Query 34151 CTGCGAGGTTTTACGCAGTGCCACTTCTTCGCCGGAATTGGCGTCTGGTCTCATTCCCTG 34210 | | | | || ||||| || |||||||||||||| ||| |||||| | ||||| Sbjct 15494 TTACAGAGCTACACCCAGTGTCATTTCTTCGCCGGAATCGGCACCTGGTCATACGCCCTG 15435 Query 34211 CGCCTCGCCGGATGGCCAGATGATAAAACAGTCTGGACCGGCTCCTGCCCGTGCCAGCCT 34270 || | | ||||| ||||||||| | || ||||| ||| || |||||||||||| Sbjct 15434 CGAAAAGTGTGCTGGCCCGATGATAAACCCGTGTGGACAGGCAGTTGTCCGTGCCAGCCT 15375 Query 34271 TTCAGCGCGGCAGGCAAAGGAGATGGGTTTGCTGACGAGCGGCACCTTTGGCCACACTTC 34330 |||||| |||||||||| ||| | || |||||||||||||||| | | ||||| ||| Sbjct 15374 TTCAGCCCGGCAGGCAAGGGAAAGGGATTTGCTGACGAGCGGCGCTTATGGCCCGCGTTC 15315 Query 34331 TTCCACCTCATC-AGCGAGCGCAGACCTCAGCATGTCTTTGGCGAACAGGTTGCAGCAGG 34389 |||||||||||| ||| || ||| |||| | | ||||||| || ||||||||| Sbjct 15314 TTCCACCTCATCCAGC-AGTGCAAACCTGACGTTATCTTTGGTGAGCAGGTTGCAAGCCC 15256 Query 34390 TAACGCAAACACATGGTTCGACCTTGTACAAGCAGACCTGGAAGGAGTGGGATA---CAC 34446 | ||| | | | ||| ||||||||||||| |||||||||| || | || ||| Sbjct 15255 TGACGGACTCGCTTGGCTCGACCTTGTACAGATTGACCTGGAAGCAGAGAACTACGCCAC 15196 Query 34447 CTTCGGGCTTGTGCCGTTCACG-TCAGCGGGCATCGGTGCGCCGCACATCAGAGAGCGAG 34505 | ||||| || | | | |||||| ||||||||||||||| | || | ||| Sbjct 15195 AGCAGCGCTTG----ATTTATGCGCTGCGGGCTTCGGTGCGCCGCACAGCCGACAACGAC 15140 Query 34506 CTTACTGGGTGGCCCACGCC 34525 ||||||||||||| ||||| Sbjct 15139 TTTACTGGGTGGCCGACGCC 15120 Score = 102 bits (112), Expect = 2e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 34947 ACGGTTTTTGGCGAGATGCGGACTGGCTCTTTTGTCGAGATGGCAAATGGCGTCCAGTTG 35006 |||| || |||||||| || |||||||||| || || ||||| |||||||| ||||||| Sbjct 14887 ACGGCTTCTGGCGAGAGGCTGACTGGCTCTGCTGCCGGGATGGAAAATGGCGGCCAGTTG 14828 Query 35007 AACCCGGCACATTCCCGCTGGTTGATGGG 35035 ||||||||||| |||||||| ||||||| Sbjct 14827 AACCCGGCACACGCCCGCTGGCTGATGGG 14799 >seq10505 Length=1270 Score = 230 bits (254), Expect = 6e-56 Identities = 218/273 (80%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 34257 GCCCGTGCCAGCCTTTCAGCGCGGCAGGCAAAGGAGATGGGTTTGCTGACGAGCGGCACC 34316 |||| |||||||||||||||||||||||||| || | |||||| |||||||||||| | Sbjct 1 GCCCCTGCCAGCCTTTCAGCGCGGCAGGCAAGGGCGGCGGGTTTTATGACGAGCGGCATC 60 Query 34317 TTTGGCCACACTTCTTCCAC---CTCATCAGCGAGCGCAGACCTCAGCATGTCTTTGGCG 34373 | ||||| | ||| | ||| ||||||||| || || | ||| || | || ||||| | Sbjct 61 TCTGGCC-CGCTTTT--CACTGGCTCATCAGCCAGTGCCGCCCTGAGTACGTTTTTGGTG 117 Query 34374 AACAGGTTGC-AGCAGGTAACGCAAACACATGGTTCGACCTTGTACAAGCAGACCTGGAA 34432 |||||||||| |||| | | |||||| ||||||||||||||||| || ||||||||| Sbjct 118 AACAGGTTGCAAGCA-GCCATGCAAACCTCTGGTTCGACCTTGTACAGGCTGACCTGGAA 176 Query 34433 GGAGTGGGATACACCTTCGGGCTTGTGCCGTTCACGTCAGCGGGCATCGGTGCGCCGCAC 34492 | |||| ||| |||||||| ||||||||| |||| |||||| ||||||| ||||| Sbjct 177 GCCGTGGACTACGCCTTCGGGTGTGTGCCGTTTCCGTCTGCGGGCGTCGGTGCCCCGCAT 236 Query 34493 ATCAGAGAGCGAGCTTACTGGGTGGCCCACGCC 34525 ||| | || || || |||||||||||| ||||| Sbjct 237 ATCCGCGACCGGGCGTACTGGGTGGCCTACGCC 269 Score = 114 bits (126), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 34939 TGAGGTTAACGGTTTTTGGCGAGATGCGGACTGGCTCTTTTGTCGAGATGGCAAATGGCG 34998 || ||||||||| || |||||||| || ||||||||| | || || |||| || ||||| Sbjct 359 TGCGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCG 418 Query 34999 TCCAGTTGAACCCGGCACATTCCCGCTGGTTGATGGGGCTGCCGCGCGCCTGGGACGA 35056 ||||||||||||||| |||||||||||| | |||||| | || ||| |||||||| Sbjct 419 GCCAGTTGAACCCGGCGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGA 476 >seq2192 Length=16777 Score = 223 bits (246), Expect = 9e-54 Identities = 216/272 (79%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 34258 CCCGTGCCAGCCTTTCAGCGCGGCAGGCAAAGGAGATGGGTTTGCTGACGAGCGGCACCT 34317 ||| ||||||||||||||||| |||||||| || | |||||| |||||||||||| || Sbjct 16777 CCCCTGCCAGCCTTTCAGCGCAGCAGGCAAGGGCGGCGGGTTTTATGACGAGCGGCATCT 16718 Query 34318 TTGGCCACACTTCTTCCAC---CTCATCAGCGAGCGCAGACCTCAGCATGTCTTTGGCGA 34374 ||||| | ||| | ||| ||||||||| || || | ||| || | || ||||| || Sbjct 16717 CTGGCC-CGCTTTT--CACTGGCTCATCAGCCAGTGCCGCCCTGAGTACGTTTTTGGTGA 16661 Query 34375 ACAGGTTGCA-GCAGGTAACGCAAACACATGGTTCGACCTTGTACAAGCAGACCTGGAAG 34433 |||||||||| |||| | |||||| ||||||||||||||||| || |||||||||| Sbjct 16660 ACAGGTTGCAAGCAGCCAT-GCAAACCTCTGGTTCGACCTTGTACAGGCTGACCTGGAAG 16602 Query 34434 GAGTGGGATACACCTTCGGGCTTGTGCCGTTCACGTCAGCGGGCATCGGTGCGCCGCACA 34493 |||| ||| |||||||| ||||||||| |||| |||||| ||||||| ||||| | Sbjct 16601 CCGTGGACTACGCCTTCGGGTGTGTGCCGTTTCCGTCTGCGGGCGTCGGTGCCCCGCATA 16542 Query 34494 TCAGAGAGCGAGCTTACTGGGTGGCCCACGCC 34525 || | || || || |||||||||||| ||||| Sbjct 16541 TCCGCGACCGGGCGTACTGGGTGGCCTACGCC 16510 Score = 114 bits (126), Expect = 3e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 34939 TGAGGTTAACGGTTTTTGGCGAGATGCGGACTGGCTCTTTTGTCGAGATGGCAAATGGCG 34998 || ||||||||| || |||||||| || ||||||||| | || || |||| || ||||| Sbjct 16420 TGCGGTTAACGGCTTCTGGCGAGAGGCTGACTGGCTCCTGTGCCGGGATGAAAAGTGGCG 16361 Query 34999 TCCAGTTGAACCCGGCACATTCCCGCTGGTTGATGGGGCTGCCGCGCGCCTGGGACGA 35056 ||||||||||||||| |||||||||||| | |||||| | || ||| |||||||| Sbjct 16360 GCCAGTTGAACCCGGCGCATTCCCGCTGGCTTATGGGGTTACCAACCGCGTGGGACGA 16303 >seq6037 Length=3259 Score = 120 bits (132), Expect = 8e-23 Identities = 226/332 (68%), Gaps = 14/332 (4%) Strand=Plus/Minus Query 39275 AATGGCTAAATCCCCAGCAGAGCGCAAAGCAGCGCAGCGTGCGCGGCAGTACGCCGCCGG 39334 |||| |||||||||||||||| || ||||| || ||||| | | || || Sbjct 2426 AATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGGGAG------------GCTGG 2379 Query 39335 TGAGCGCAAGCTTGAGCTGGTACTGGATGGGCAGGAACTGGAAATGCTGGCGCGGAACTG 39394 | ||| |||| || || ||| ||||||||||| |||||| |||||||| Sbjct 2378 CGTAACAAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTG 2319 Query 39395 CACAGCCCGTCGCCATGGTCGTGCGCCGTATGACATGAGCGAGTACATCGCGTTGCTGAT 39454 | | | || || | || | ||| || |||||| |||||| ||| ||||||||| Sbjct 2318 CGCTGTACGGCGACCAGGCAAAGAGCCCTACGACATGGACGAGTATATCCAGTTGCTGAT 2259 Query 39455 CCGCCAGGATGATGCCCGCGTTCGTGGCCGTATCAAATCCATCAGCGCGAACCGATGCGG 39514 |||| |||| || ||| | || || || || ||||| ||||| | | || ||||| Sbjct 2258 CCGCTAGGACGACGCCAGAGTGCGACAGCGGATTAAATCGCTCAGCAAGCAACGTTGCGG 2199 Query 39515 GAAATGTGGCGATTCACTGCCGGTTAAGTCGTG-TCCGTGCGATGGTGATTCGGCATGTT 39573 ||||||||||| ||| |||| || | ||| | | ||| | ||||| || | ||| | Sbjct 2198 TAAATGTGGCGAGTCATTGCCCGTCACAGAGTGTTGCATGC-AGGGTGACTCTGAATGCT 2140 Query 39574 GGGTAACCCGTGGATGGCATGAAACTAAATTA 39605 || || | ||||||||||||| ||| || Sbjct 2139 GGAACACAAGCGGATGGCATGAAATCAAACTA 2108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126800694385002