Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq57 105 6e-18
>seq57
Length=2082711
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| | | ||| | | || |||| ||| || ||
Sbjct 1620467 GTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGCTTTCCA 1620526
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | ||||||||| || | || || || || ||||| ||||
Sbjct 1620527 GCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTTTT 1620586
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| |||||| ||| | ||||| ||||| || || | ||||
Sbjct 1620587 ACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTTCCAGTCAGAGTT 1620646
Query 19025 TTGACAAAAATTTGCATT 19042
|| |||||||||||||||
Sbjct 1620647 TTCACAAAAATTTGCATT 1620664
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| | | ||| | | || |||| ||| || ||
Sbjct 1619099 GTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCCAACTGCTTTCCA 1619158
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | ||||||||| || | || || || || ||||| |||
Sbjct 1619159 GCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTTTA 1619218
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| ||||| ||| | ||||| ||||| || || | ||||
Sbjct 1619219 ACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTTCCAGTCAGAGTT 1619278
Query 19025 TTGACAAAAATTTGCATT 19042
|| || ||||||||||||
Sbjct 1619279 TTCACGAAAATTTGCATT 1619296
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| | | ||| | | || || | ||| || ||
Sbjct 1619555 GTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCTAACTGCTTTCCA 1619614
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | ||||||||| || | || ||||| || ||||| |||
Sbjct 1619615 GCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTATCCTGGATTTTAGCCTTT 1619674
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | ||||| ||||| ||| | ||||| ||||| || || | ||||
Sbjct 1619675 ACGTTCTCTATTGTATCAGACGGCTCAACTTCAAGAGTAATAGTTTTTCCAGTCAGAGTT 1619734
Query 19025 TTGACAAAAATTTGCATT 19042
|| |||||||||||||||
Sbjct 1619735 TTCACAAAAATTTGCATT 1619752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414489245054578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |