Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq3409 176 2e-39
seq6242 96.9 1e-15
>seq3409
Length=8325
Score = 176 bits (194), Expect = 2e-39
Identities = 259/364 (71%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 24466 GGTATCTGGACCATCTGCCGCGGTGCCATCCTGGTGGATGGTAAACCTGTCGTCCCGGGC 24525
|| |||||||| || ||| | || | | | ||| ||||| || || || || ||||
Sbjct 3050 GGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTAGTGAAGGGC 3109
Query 24526 ATGAAGTTGTCGAAGGAAAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTG 24585
|||||| || | | | || | || || | ||| || | | ||||||||
Sbjct 3110 ATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCAGAACAGCAAAAGGCGCTC 3169
Query 24586 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 24645
| |||||||| ||| | ||||||||||| || || | ||||||| || || ||
Sbjct 3170 GATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAAGTCGGCATTGCC 3229
Query 24646 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 24705
||||| ||||||| || || ||||||||||| || ||| | || ||||| ||| | | |
Sbjct 3230 TCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACGTTCTACCG-CAA 3288
Query 24706 ATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGG 24764
||| ||||| || |||| | ||||||||| ||| |||| | |||||| ||||||
Sbjct 3289 ATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAAGCGCTGGATTTGGGACGG 3348
Query 24765 TGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGATATCCCGTCGTGACCA 24824
|||| ||| |||||||| || | || ||||||||||| |||||| | || ||||||||
Sbjct 3349 AGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCAGATAGCGCGGCGTGACCA 3408
Query 24825 GGAG 24828
||||
Sbjct 3409 GGAG 3412
>seq6242
Length=2873
Score = 96.9 bits (106), Expect = 1e-15
Identities = 170/246 (69%), Gaps = 9/246 (4%)
Strand=Plus/Minus
Query 17007 GGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAACAATTAGCCCTAAC 17066
|| || ||||||||||| |||||| | |||||||| ||||||||| | ||||| |||
Sbjct 564 GGAGTAATTCAACTTCCCTCAATGGAGAAAGTTGAGAATAAACAATAGAATAGCCACAAC 505
Query 17067 AAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTAAGCGAGGCAGCATTATTGTC 17126
|| | | || || || || |||||||||||||| | |||||| |||||
Sbjct 504 CGTTTTATGGAGGCTTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTT 445
Query 17127 GTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCG-- 17184
||||| || | || || ||||| ||||| | | || || || |||| ||||| |
Sbjct 444 GTCGCCCAACTTTCCCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385
Query 17185 AAGGGGCAACCGCGAAAA-----TACCACAAACCTTTTCTGAGGCATTGCGCCTTGCGGC 17239
|| |||| |||||| |||| |||||||| || || ||||| || || ||
Sbjct 384 AATACTCAAC--CGAAAATCCGGTACCTCAAACCTTCTCAGAAGCATTAATGCTCGCCGC 327
Query 17240 CGACCT 17245
||| ||
Sbjct 326 CGAACT 321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185218020319848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |