Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq3409 176 2e-39 seq6242 96.9 1e-15 >seq3409 Length=8325 Score = 176 bits (194), Expect = 2e-39 Identities = 259/364 (71%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 24466 GGTATCTGGACCATCTGCCGCGGTGCCATCCTGGTGGATGGTAAACCTGTCGTCCCGGGC 24525 || |||||||| || ||| | || | | | ||| ||||| || || || || |||| Sbjct 3050 GGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTAGTGAAGGGC 3109 Query 24526 ATGAAGTTGTCGAAGGAAAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTG 24585 |||||| || | | | || | || || | ||| || | | |||||||| Sbjct 3110 ATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCAGAACAGCAAAAGGCGCTC 3169 Query 24586 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 24645 | |||||||| ||| | ||||||||||| || || | ||||||| || || || Sbjct 3170 GATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAAGTCGGCATTGCC 3229 Query 24646 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 24705 ||||| ||||||| || || ||||||||||| || ||| | || ||||| ||| | | | Sbjct 3230 TCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACGTTCTACCG-CAA 3288 Query 24706 ATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGG 24764 ||| ||||| || |||| | ||||||||| ||| |||| | |||||| |||||| Sbjct 3289 ATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAAGCGCTGGATTTGGGACGG 3348 Query 24765 TGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGATATCCCGTCGTGACCA 24824 |||| ||| |||||||| || | || ||||||||||| |||||| | || |||||||| Sbjct 3349 AGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCAGATAGCGCGGCGTGACCA 3408 Query 24825 GGAG 24828 |||| Sbjct 3409 GGAG 3412 >seq6242 Length=2873 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/246 (69%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 17007 GGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAACAATTAGCCCTAAC 17066 || || ||||||||||| |||||| | |||||||| ||||||||| | ||||| ||| Sbjct 564 GGAGTAATTCAACTTCCCTCAATGGAGAAAGTTGAGAATAAACAATAGAATAGCCACAAC 505 Query 17067 AAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTAAGCGAGGCAGCATTATTGTC 17126 || | | || || || || |||||||||||||| | |||||| ||||| Sbjct 504 CGTTTTATGGAGGCTTACCATTTTGAGGGTGAACAAGGTAAGCGTGACAGCATCATTGTT 445 Query 17127 GTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCG-- 17184 ||||| || | || || ||||| ||||| | | || || || |||| ||||| | Sbjct 444 GTCGCCCAACTTTCCCCCGAATTTACCGCCAGATTAGTAGATCGTTGGCAGGAACTGGAA 385 Query 17185 AAGGGGCAACCGCGAAAA-----TACCACAAACCTTTTCTGAGGCATTGCGCCTTGCGGC 17239 || |||| |||||| |||| |||||||| || || ||||| || || || Sbjct 384 AATACTCAAC--CGAAAATCCGGTACCTCAAACCTTCTCAGAAGCATTAATGCTCGCCGC 327 Query 17240 CGACCT 17245 ||| || Sbjct 326 CGAACT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185218020319848