Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_004913.3
Length=59866
Score E
Sequences producing significant alignments: (Bits) Value
seq1599 250 1e-61
seq3409 178 5e-40
seq3892 147 8e-31
seq1577 102 3e-17
seq4809 100 1e-16
seq5862 93.3 2e-14
>seq1599
Length=30855
Score = 250 bits (276), Expect = 1e-61
Identities = 253/329 (77%), Gaps = 13/329 (4%)
Strand=Plus/Minus
Query 31040 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 31099
|||||| ||||| |||||||| | ||| | ||| |||||||| ||||| |||| |||||
Sbjct 20322 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTGTCGTTGTGCTCCACCAT 20263
Query 31100 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 31159
||| |||||||||||| || ||||| ||||||||||| ||| | ||||| || | |||
Sbjct 20262 TGCCAGTTCTTTGGCTGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 20203
Query 31160 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 31219
||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| |
Sbjct 20202 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTCAACGAAACCAAACTCCGC 20143
Query 31220 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 31279
||| ||||| |||||||||| |||||| | |||| || ||||| ||
Sbjct 20142 AATCCGTTCGGTAATCCACGTTGCAAAAGG-----------CAAGGAATTCATGTAGCTC 20094
Query 31280 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGAG 31339
|| |||| | || || |||| |||||| ||||| || ||||| |||||||||||
Sbjct 20093 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 20034
Query 31340 TTGACTGGTCATGATGACCTCCT-TATTT 31367
||| | ||||| | || |||| |||||
Sbjct 20033 TTGTGTTGTCAT-TTTACGTCCTCTATTT 20006
>seq3409
Length=8325
Score = 178 bits (196), Expect = 5e-40
Identities = 270/382 (71%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 56023 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 56082
|| || | ||| || | || |||||||| || ||| |||| | || ||||| |||||
Sbjct 3032 GCTTATCCTGACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 3091
Query 56083 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 56142
||||| || | |||||||||||| | | | || | | || | |||
Sbjct 3092 AAGCCGGTAGTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAGATTGATGCCGCA 3151
Query 56143 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 56202
|| | | |||||||| | |||||||| ||| | ||||||||||| || || |
Sbjct 3152 GAACAGCAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACT 3211
Query 56203 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 56262
||||||| || || || ||||| ||||||| || || ||||||||||| || ||| |
Sbjct 3212 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 3271
Query 56263 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 56321
|| ||||| ||| | | |||| ||||| || |||| | ||||||||| ||| |||
Sbjct 3272 TCAACGTTCTACCG-CAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAA 3330
Query 56322 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 56381
| |||||| |||||| |||| ||| |||||||| || | || ||||||||||| ||
Sbjct 3331 GCGCTGGATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCA 3390
Query 56382 GGTATCCCGTCGTGACCAGGAG 56403
| || | || ||||||||||||
Sbjct 3391 GATAGCGCGGCGTGACCAGGAG 3412
Score = 143 bits (158), Expect = 1e-29
Identities = 132/164 (80%), Gaps = 10/164 (6%)
Strand=Plus/Minus
Query 31341 TGACTGGTCATGATGACCTCCTTATTTGTTTAGTTT--ATAACCGCCAGTTAGTAGCTGG 31398
||||| | ||| | | |||||||| | ||||||||| || ||| |||||||||||||
Sbjct 1109 TGACTTGGCATAAAG-CCTCCTTACTAGTTTAGTTTCGATTACC---AGTTAGTAGCTGG 1054
Query 31399 CGGTCGGGTGTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTG 31458
| |||| |||||||||| | | |||| | |||||||||||||||||||||| || |||
Sbjct 1053 TAGCCGGGCGTCAACTGAGTCTAGTAAGCAACTCTGGGCATATTCCCCTTGCGAGTATTG 994
Query 31459 TATTACGCCTCTCCACCCGACCTTTGTACGGATGTAACTATGCC 31502
||||||||||||||||||| |||| ||||||| | || |||
Sbjct 993 TATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGCC 954
>seq3892
Length=6556
Score = 147 bits (162), Expect = 8e-31
Identities = 225/312 (72%), Gaps = 14/312 (4%)
Strand=Plus/Minus
Query 31038 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 31097
||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| |||
Sbjct 3490 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 3431
Query 31098 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAA 31157
|||||| |||||| || || |||||||| || |||||||| ||| | | ||||| |
Sbjct 3430 ATCGCCAGTTCTTTAGCAGTGTCGAGGGTGAGCTGGTAGTCCTTTCTGCGACGCCC--GA 3373
Query 31158 CCTATTTC-CCGTTTCTGG-GAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACT 31215
| |||| ||| ||||| |||| | || ||||| ||||| | || |||||||
Sbjct 3372 CAGTTTTCGCCGAATCTGGCGAAAATACGATGTAGTCTAGATTTGCGGTAAACCCGTACT 3313
Query 31216 CTTCAATACGTTCTGTAATCCACGATGCAAA----GCGTTTACCTAC-TCCAAGAAAAGT 31270
|| ||| || || |||||| | || ||| ||| ||||| | ||| ||||||
Sbjct 3312 CTGAAATTCGCTCACGAATCCA-GTTGGAAAAGTCGCG---GCCTACATTCAA-AAAAGT 3258
Query 31271 ATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATAC 31330
||| | ||| || |||||| |||||| ||| ||||| || || ||||| || || ||
Sbjct 3257 ATGAAGATCGCGAGCATTACAAAGAAGAATGGAATCGTTTGCAATGGTGCCATTAAAAAC 3198
Query 31331 GGGGATGAGTTG 31342
|||||||| ||
Sbjct 3197 AGGGATGAGCTG 3186
>seq1577
Length=31499
Score = 102 bits (112), Expect = 3e-17
Identities = 220/327 (67%), Gaps = 14/327 (4%)
Strand=Plus/Plus
Query 31038 TTCTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACC 31097
||||| || || ||||||||||| | || | ||| ||||||| ||||| ||||| |||
Sbjct 21929 TTCTTCTCACATTCGATGAAGTAGCGTCGCACCTGACGGCCTTGCTCGTTGCGCTCAACC 21988
Query 31098 ATCGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGT-CTTTTTTC----------- 31145
|||||| ||||| ||||| | ||||| || ||||||| ||| |||
Sbjct 21989 ATCGCCAGCTCTTTTGCTGTGTTCAGGGTGAGATGGTAGTCCTTGCTTCTTCTATCTCCA 22048
Query 31146 CCTCGCCCATAACCTATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACG 31205
||||| || ||| ||| | || || || |||||| ||||| | |
Sbjct 22049 CCTCGTGTATTTTTGATTCCCCCACTTTGATGAACCAAAATGTAGTCCGCGTTTTCGATG 22108
Query 31206 AATCCGTACTCTTCAATAC-GTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAG 31264
||||||||||| || | ||||| ||||||| | || ||| | || | ||
Sbjct 22109 AATCCGTACTCGGTAACGCGGTTCT-TAATCCATGTTGAAAAATCACGGCGAACATCGAG 22167
Query 31265 AAAAGTATGTAAATCACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTT 31324
|| ||| | | ||| |||| | || ||||| | |||||||| |||||||||||
Sbjct 22168 GAATTCATGCAGCTTACGCGCATCACACAGTAGAGTTGCTTCGTTGGAAATAGTGCCGTT 22227
Query 31325 GAATACGGGGATGAGTTGACTGGTCAT 31351
||| |||||||| || ||| |||||||
Sbjct 22228 GAAAACGGGGATAAGCTGATTGGTCAT 22254
>seq4809
Length=3389
Score = 100 bits (110), Expect = 1e-16
Identities = 243/363 (67%), Gaps = 10/363 (3%)
Strand=Plus/Plus
Query 48330 TCAAATCAAATACGCCAGCACACGACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTG 48389
|||||||| | || | || | |||||||| |||| ||| |||| | | |||
Sbjct 71 TCAAATCACACACCAGACCAGAGCACAAGGACACATGGCGAACCCCGCCCGAGGTCTTTC 130
Query 48390 ATGCACTGGATATTGAGTTTGGATTCTGGCTGGATTCAGCTGCGAGCGACAAAAACGCTC 48449
| || |||||| |||||||| |||| || ||| | || ||| | || | || | |
Sbjct 131 AGGCGCTGGATGCGGAGTTTGGCTTCTACCTCGATGCCGCCGCGGACCACGACAATACCC 190
Query 48450 TGTGTGCTCACTGGCTAACTGAGGCT----GACGACGCGCTAAATTCTGAGTGGATAAGC 48505
||||| || || || |||| || || || || || | ||| |||| |||
Sbjct 191 TGTGTCGTC--TG--TATCTGACGCCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGC 246
Query 48506 CACGGTGCAATCTGGAATAACCCACCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCC 48565
||| || |||| || || ||||||||||||||| | || ||||| || |||||
Sbjct 247 ACCGGCGCCATCTTCTGCAATCCCCCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCT 306
Query 48566 GCTGAGCAGTGCATACAACAGCGACAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCT 48625
||||||||| || | ||| | ||||| || ||||| |||| | ||||| ||
Sbjct 307 GCTGAGCAGAGCCGCAAGCAGAATAAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCG 366
Query 48626 GTCGGATGGTTCAGCA-AGGCTCTGGAGAGTGTTGACGAAGTTCGCATCATCACTGATGG 48684
||||||||| ||| ||||| | | | ||||| || || ||| ||||||| || ||
Sbjct 367 ACGGGATGGTTC-GCACTGGCTCAGAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGG 425
Query 48685 ACG 48687
||
Sbjct 426 GCG 428
>seq5862
Length=3465
Score = 93.3 bits (102), Expect = 2e-14
Identities = 227/339 (67%), Gaps = 10/339 (3%)
Strand=Plus/Plus
Query 48354 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 48413
|||||||| |||| ||| |||| | | || | || |||||| |||||||| |
Sbjct 23 ACAAGGACACATGGCGAACCCCGCACGAGGTCTTCCAGGCGCTGGATGCGGAGTTTGGCT 82
Query 48414 TCTGGCTGGATTCAGCTGCGAGCGACAAAAACGCTCTGTGTGCTCACTGGCTAACTGAGG 48473
||| || ||| | || ||| | || | || | |||||| || || || |||| |
Sbjct 83 TCTACCTCGATGCCGCCGCGGACCACGACAATACCCTGTGTCGTC--TG--TATCTGACG 138
Query 48474 CT----GACGACGCGCTAAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCA 48529
| || || || || | ||| |||| ||| ||| || |||| || ||
Sbjct 139 CCAGAGGATGATGCCCTTGCCTGTGACTGGAGTAGCACCGGCGCCATCTTCTGCAATCCC 198
Query 48530 CCGTACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGA 48589
||||||||||||||| | || ||||| || ||||| ||||||||| || | |||
Sbjct 199 CCGTACAGCAATATCCGCCCCTGGGTTGATAAAGCTGCTGAGCAGAGCCGCAAGCAGAAT 258
Query 48590 CAGACGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCA-AGGCTCT 48648
| ||||| || ||||| |||| | ||||| || ||||||||| ||| |||| |
Sbjct 259 AAAACGGTCGTTATGCTGCTGCCTGCGGATACCTCGACGGGATGGTTC-GCACAGGCACA 317
Query 48649 GGAGAGTGTTGACGAAGTTCGCATCATCACTGATGGACG 48687
| | | ||||| || || ||| ||||||| || || ||
Sbjct 318 GAAAACGGTTGATGAGGTGCGCTTCATCACCGAAGGGCG 356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191412003725832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |