Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq57 113 3e-20 seq504 82.4 5e-11 >seq57 Length=2082711 Score = 113 bits (124), Expect = 3e-20 Identities = 167/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | || ||||| | || ||||| ||||| ||||||||||||| Sbjct 1619068 ACCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAG- 1619126 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || ||||| | || ||||| ||||||||| ||| || | ||| ||||| || | Sbjct 1619127 ---ATAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTG 1619183 Query 33258 TGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || | | | || ||| || ||| ||| || || || Sbjct 1619184 GTGGGATTCCTTCCTTATCCTGGATTTTGGC---TTTAACATTTTCAATAGTATCAGAGG 1619240 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| || ||||| || |||||||| || |||||||| |||||||||||||| Sbjct 1619241 GCTCAACTTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACGAAAATTTGCAT 1619295 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | ||||||||||| || ||||| || |||||||||||||| || Sbjct 1621121 CCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATCGGAT 1621180 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || ||||| ||||||||| ||| ||||| |||||||| || | || Sbjct 1621181 AGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCAGGAGGG 1621240 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || || | ||| ||||| ||| ||| || || || | | Sbjct 1621241 ATTCCTTCCTTATCTTGAATTTTAGCC---TTTACGTTTTCAATAGTATCTGAAGGCTCA 1621297 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| || || ||||| | ||||||||||| || ||||| || Sbjct 1621298 ACTTCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCATTTT 1621350 Score = 107 bits (118), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | ||| | |||||||| | || ||||| ||||| ||||||||||||| Sbjct 1619524 ACCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAG- 1619582 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || ||||| | || || || ||||||||| ||| || | ||| ||||| || | Sbjct 1619583 ---ATAGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTG 1619639 Query 33258 TGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || |||||||| || | | | ||| ||||| | | || || || | Sbjct 1619640 GTGGAATTCCTTCTTTATCCTGGATTTTAGCC---TTTACGTTCTCTATTGTATCAGACG 1619696 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| || ||||| || |||||||| || |||||||| || ||||||||||| Sbjct 1619697 GCTCAACTTCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751 Score = 107 bits (118), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | || ||||| | || ||||| ||||| ||||||||||||| Sbjct 1620436 ACCACCTCTAAGACGAAGAACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAG- 1620494 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || ||||| | || ||||| ||||||||| ||| || | ||| ||||| || | Sbjct 1620495 ---ATAGAGTTCGGCCATCTTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTG 1620551 Query 33258 TGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || | | | || |||||| ||| ||| || || || Sbjct 1620552 GTGGGATTCCTTCCTTATCCTGGATTTTGGC---TTTTACATTTTCAATAGTATCAGAGG 1620608 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || || ||||| || |||||||| || |||||||| || ||||||||||| Sbjct 1620609 GCTCCACTTCAAGAGTAATTGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1620663 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || ||||| || |||||||||||||| | || | || || || || || ||| Sbjct 1620011 GTTGATTCTTTCTGAATATTGTAATCAGAAAGGGTGCGCCCATCTTCTAACTGTTTCCCA 1620070 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || || | ||||||||| | ||||| ||||| || || |||| | |||| Sbjct 1620071 GCGAAAATCAACCTTTGCTGGTCAGGTGGTATTCCTTCCTTATCTTGAATCTTCGCTTTT 1620130 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| ||||| |||| || || ||||| || || ||||| |||||||| Sbjct 1620131 ACATTTTCAATTGTGTCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTC 1620190 Query 33353 TTTACGAAAATTTGCAT 33369 || ||||| || ||||| Sbjct 1620191 TTAACGAAGATCTGCAT 1620207 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | ||||||||||| || |||||||| |||||||||||||||||| Sbjct 1620209 CCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGAC 1620268 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || ||||| ||||| || ||| || || | || || || | || Sbjct 1620269 AGTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGGA 1620328 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| ||| || ||| ||| || || |||| || Sbjct 1620329 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTACT 1620388 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 1620389 TCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCA 33221 ||||||||| |||||||| || || || |||||||| | ||||| | || |||| Sbjct 1618864 ATGCAATGTTGACTCTTTCTGAATGTTATAATCAGAAA----GAGTTCGACCATCTTCCA 1618919 Query 33222 ATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA 33281 | || || ||| || || || | |||||| || | || || ||||| || || || Sbjct 1618920 ACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTGAA 1618979 Query 33282 TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTC 33341 || |||||| ||| ||| || || |||| || || | || |||||||||| Sbjct 1618980 TCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTTTC 1619039 Query 33342 CCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || | |||||| ||||| || ||||| Sbjct 1619040 CTGTTAAAGTTTTCACGAATATCTGCAT 1619067 >seq504 Length=327254 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || ||||||||||| || | || || || || | || || ||| ||| | Sbjct 214104 CTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAA 214163 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTG 33296 | || | |||||| || | || || |||||||| || ||| |||| | || Sbjct 214164 TCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGCCT---TAACAT 214220 Query 33297 TTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTA 33356 ||| ||| ||||| ||||| ||| || || || || ||||| ||||| | |||||| | Sbjct 214221 TTTCAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTCA 214280 Query 33357 CGAAAATTTGCATGTTT 33373 | ||||||||||| ||| Sbjct 214281 CAAAAATTTGCATATTT 214297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318713352068226