Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq57 122 6e-23 seq504 95.1 9e-15 >seq57 Length=2082711 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||| | || | ||||| || || || |||||||||||||| Sbjct 1618613 CCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGAC 1618672 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || |||| ||||||||||| ||||| || ||||||| ||||||||| | ||| Sbjct 1618673 AAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGT 1618732 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| ||| || | ||| ||| || | || || || Sbjct 1618733 ATTCCTTCCTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAACT 1618792 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || ||||| ||||||||||||||||| Sbjct 1618793 TCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | |||| |||||| || ||||| ||||| | | || |||| ||| Sbjct 1620227 ACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGACAGTGTGCGACCATCTTCC 1620286 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || |||||||| ||||||| || || || | || | ||||||||||||| | Sbjct 1620287 AACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 1620346 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| ||||| | || || || || | || || ||||| Sbjct 1620347 ATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTT 1620406 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || ||||| ||||| Sbjct 1620407 CCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || ||| ||| ||||||||||| ||||| || || |||| ||| Sbjct 1620455 ACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCC 1620514 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || ||||| ||||| || | || ||||| || | || | ||||| ||||| Sbjct 1620515 AACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGG 1620574 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| |||||| | |||||||| || | ||||||||||| Sbjct 1620575 ATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTT 1620634 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||| |||||||| |||||||| Sbjct 1620635 CCAGTCAGAGTTTTCACAAAAATTTGCAT 1620663 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 || ||||| || ||| ||| ||||||||||| ||||| || || |||| ||| Sbjct 1619087 ACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCC 1619146 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || ||||| ||||| || | || ||||| || | || | ||||| ||||| Sbjct 1619147 AACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGG 1619206 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| |||||| | ||||| || || | ||||||||||| Sbjct 1619207 ATTTTGGCTTTAACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTT 1619266 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||| ||||| || |||||||| Sbjct 1619267 CCAGTCAGAGTTTTCACGAAAATTTGCAT 1619295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || ||| ||| ||||||||||| ||||| || || |||| || Sbjct 1619543 ACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCT 1619602 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || ||||| ||||| || | || ||||| || | || | ||||||||||| Sbjct 1619603 AACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATTCCTTCTTTATCCTGG 1619662 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| || || | | | ||||| | |||||| || || | ||||| ||||| Sbjct 1619663 ATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAACTTCAAGAGTAATAGTTTTT 1619722 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||| |||||||| |||||||| Sbjct 1619723 CCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | |||| || | ||||| || ||||| || ||||| || || Sbjct 1619753 CCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAGAC 1619812 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || |||| ||||| || || |||||||| ||||| | || || || | || Sbjct 1619813 AGAGTG-CGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTGG 1619871 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||| || | | | || || | ||| ||||| Sbjct 1619872 AATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCTATCGTGTCAGACGGTTCCAC 1619931 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || ||||| ||||| |||||||| ||||| Sbjct 1619932 TTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCAT 1619979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| ||| | || | |||||| || ||||| |||||||||||||| | Sbjct 1620665 CCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAATATTATAATC-TGA 1620723 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || || || ||||| || || || || | ||| ||||| | || Sbjct 1620724 AAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTGTTGGTCGGGTGG 1620783 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||| || || | | | ||||||| |||||| || Sbjct 1620784 AATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCTGACGGCTCAAC 1620843 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || | || || ||||| |||||||| Sbjct 1620844 TTCAAGAGTAATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCAT 1620891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| ||| | || | |||||| || ||||| || ||||||||||| Sbjct 1619297 CCTCCTCTCAGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATATTATAATCTGAG 1619356 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || |||| || | || ||||| || || || |||| ||| ||||| | || Sbjct 1619357 AGAGTGCGGC-CATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGTTGGTCTGGTGG 1619415 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| |||||| || || | | | ||| || | || || || Sbjct 1619416 AATTCCTTCTTTATCTTGAATTTTGGCCTTAACATTTTCGATAGTGTCAGATGGTTCAAC 1619475 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | |||||||||||| || ||||| Sbjct 1619476 TTCAAGTGTAATGGTCTTTCCTGTAAGAGTCTTCACAAAGATCTGCAT 1619523 >seq504 Length=327254 Score = 95.1 bits (104), Expect = 9e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||| || ||||| |||||| | || |||| || | ||||| || ||||| | Sbjct 214104 CTTTCTGGATATTGTAATCGGAAAGGGTGCGTCCATCTTCTAGCTGTTTGCCAGCAAAAA 214163 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 |||| | |||||| || |||| | |||||||||||| || ||| || || | Sbjct 214164 TCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATCTTTGCCTTAACATTTT 214223 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| || |||| || || || || | |||||||||||||| || ||||| ||||||| Sbjct 214224 CAATTGTGTCTGAGGGTTCAACCTCAAGGGTAATTGTTTTACCCGTCAAAGTTTTCACAA 214283 Query 44112 ATATTTGCAT 44121 | |||||||| Sbjct 214284 AAATTTGCAT 214293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354706096459476