Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq3409 289 8e-74 seq2617 82.4 2e-11 >seq3409 Length=8325 Score = 289 bits (320), Expect = 8e-74 Identities = 379/520 (73%), Gaps = 6/520 (1%) Strand=Plus/Plus Query 42962 TCAACAAAAAGCAAATTGAGCGCGGCAATTCTGGCGCTGATCGCTACTGGAGCTTCTGCA 43021 |||| | ||||||| | || |||||||| |||||||| |||||| |||| | |||| Sbjct 2921 TCAAAAGCAAGCAAACTCAGTGCGGCAATGCTGGCGCTCATCGCTGCTGGCGTGACTGCT 2980 Query 43022 CCAGTAATGATGTCTCAATTTCAGAAAGAAAAAGAAGGCACAAGCCTGATTGCTTATCCT 43081 || || |||||| | ||||| |||| |||||||| || | | | | ||||||||| Sbjct 2981 CCCGTGATGATGGCGCAATTCCAGACTGAAAAAGAGGGGATGCGTATAAACGCTTATCCT 3040 Query 43082 GACAACGGCGGTGTCTGGACTATTTGCGGTGGTGTTACGCGCGTGGACGGAAAACCAGTC 43141 ||| |||||| ||||||| ||||||||||| || || || || || || || || || Sbjct 3041 GACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTA 3100 Query 43142 GTTAAGGGCATGAAGCTCACT--CAAACACAATGCAACTCCATCGACAAGGCAGAGCAAG 43199 || |||||||||||||| || | || ||||| || || ||||| || | Sbjct 3101 GTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAG--ATTGATGCCGCAGAACA-G 3157 Query 43200 CCAAAG-CGCTGTTATGGGTGCAGAAGAATGTCTACGTTCCTCTGACAGAGCCGCAAAAG 43258 | |||| |||| |||||| | || || | || || || || ||| | || || Sbjct 3158 CAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAA 3217 Query 43259 GTCGGGATCGCTTCATTCTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACG 43318 ||||| || || ||||| || || ||||| || || || |||| || ||||| || ||| Sbjct 3218 GTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACG 3277 Query 43319 TTCTATCGAAAATTAAATTTAGGCGACCGCTTAGGCGCGTGCGCTGAAATTAAACGCTGG 43378 ||||| || ||||| ||| ||||| | | | || || ||| || ||||| |||||| Sbjct 3278 TTCTACCGCAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAAGCGCTGG 3337 Query 43379 ATACATGACGGCGGGAAAGATTGCCGTATTCGCTCCAATAACTGTTACGGGCAGATAGAG 43438 || ||||| || |||||||||||||| ||| |||||||||||||||||||||||| | Sbjct 3338 ATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCAGATAGCG 3397 Query 43439 CGCCGTGAACAAGAAAGCGAATTAACGTGTTGGGGGCTGG 43478 || ||||| || || |||||| |||| |||||||||| Sbjct 3398 CGGCGTGACCAGGAGGCGGAATTATCGTGCTGGGGGCTGG 3437 >seq2617 Length=13952 Score = 82.4 bits (90), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 43049 GAAAAAGAAGGCACAAGCCTGATTGCTTATCCTGACAACGGCGGTGTCTGGACTATTTGC 43108 |||||||| |||| | ||||| || || || || ||||| ||||| |||||| Sbjct 3357 GAAAAAGAGGGCAACCATTTAATTGCATACCCAGATGGTGGTGGTGTATGGACGATTTGC 3298 Query 43109 GGTGGTGTTACGCGCGTGGACGGAAAACCAGTCGTTAAGGGCATGAAGCTCAC 43161 |||||||| ||||| || || ||||| || || || |||||||||||||| || Sbjct 3297 GGTGGTGTAACGCGGGTAGATGGAAAGCCGGTAGTGAAGGGCATGAAGCTGAC 3245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148134104173794