Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_005069.1
Length=46339
Score E
Sequences producing significant alignments: (Bits) Value
seq3409 289 8e-74
seq2617 82.4 2e-11
>seq3409
Length=8325
Score = 289 bits (320), Expect = 8e-74
Identities = 379/520 (73%), Gaps = 6/520 (1%)
Strand=Plus/Plus
Query 42962 TCAACAAAAAGCAAATTGAGCGCGGCAATTCTGGCGCTGATCGCTACTGGAGCTTCTGCA 43021
|||| | ||||||| | || |||||||| |||||||| |||||| |||| | ||||
Sbjct 2921 TCAAAAGCAAGCAAACTCAGTGCGGCAATGCTGGCGCTCATCGCTGCTGGCGTGACTGCT 2980
Query 43022 CCAGTAATGATGTCTCAATTTCAGAAAGAAAAAGAAGGCACAAGCCTGATTGCTTATCCT 43081
|| || |||||| | ||||| |||| |||||||| || | | | | |||||||||
Sbjct 2981 CCCGTGATGATGGCGCAATTCCAGACTGAAAAAGAGGGGATGCGTATAAACGCTTATCCT 3040
Query 43082 GACAACGGCGGTGTCTGGACTATTTGCGGTGGTGTTACGCGCGTGGACGGAAAACCAGTC 43141
||| |||||| ||||||| ||||||||||| || || || || || || || || ||
Sbjct 3041 GACGGCGGCGGCATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTA 3100
Query 43142 GTTAAGGGCATGAAGCTCACT--CAAACACAATGCAACTCCATCGACAAGGCAGAGCAAG 43199
|| |||||||||||||| || | || ||||| || || ||||| || |
Sbjct 3101 GTGAAGGGCATGAAGCTGACCGCCGGGCAGTGTGCAAAG--ATTGATGCCGCAGAACA-G 3157
Query 43200 CCAAAG-CGCTGTTATGGGTGCAGAAGAATGTCTACGTTCCTCTGACAGAGCCGCAAAAG 43258
| |||| |||| |||||| | || || | || || || || ||| | || ||
Sbjct 3158 CAAAAGGCGCTCGATTGGGTGGATCGCAACGTTAAAGTGCCGCTCACTGAGACTCAGAAA 3217
Query 43259 GTCGGGATCGCTTCATTCTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACG 43318
||||| || || ||||| || || ||||| || || || |||| || ||||| || |||
Sbjct 3218 GTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACG 3277
Query 43319 TTCTATCGAAAATTAAATTTAGGCGACCGCTTAGGCGCGTGCGCTGAAATTAAACGCTGG 43378
||||| || ||||| ||| ||||| | | | || || ||| || ||||| ||||||
Sbjct 3278 TTCTACCGCAAATTGAATGCCGGCGATCTCATTGGTGCCTGCAAAGAGATTAAGCGCTGG 3337
Query 43379 ATACATGACGGCGGGAAAGATTGCCGTATTCGCTCCAATAACTGTTACGGGCAGATAGAG 43438
|| ||||| || |||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 3338 ATTTGGGACGGAGGCAAAGATTGCCGTATCCGCGCCAATAACTGTTACGGGCAGATAGCG 3397
Query 43439 CGCCGTGAACAAGAAAGCGAATTAACGTGTTGGGGGCTGG 43478
|| ||||| || || |||||| |||| ||||||||||
Sbjct 3398 CGGCGTGACCAGGAGGCGGAATTATCGTGCTGGGGGCTGG 3437
>seq2617
Length=13952
Score = 82.4 bits (90), Expect = 2e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 43049 GAAAAAGAAGGCACAAGCCTGATTGCTTATCCTGACAACGGCGGTGTCTGGACTATTTGC 43108
|||||||| |||| | ||||| || || || || ||||| ||||| ||||||
Sbjct 3357 GAAAAAGAGGGCAACCATTTAATTGCATACCCAGATGGTGGTGGTGTATGGACGATTTGC 3298
Query 43109 GGTGGTGTTACGCGCGTGGACGGAAAACCAGTCGTTAAGGGCATGAAGCTCAC 43161
|||||||| ||||| || || ||||| || || || |||||||||||||| ||
Sbjct 3297 GGTGGTGTAACGCGGGTAGATGGAAAGCCGGTAGTGAAGGGCATGAAGCTGAC 3245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148134104173794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |