Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq57 107 2e-18 seq252 82.4 6e-11 >seq57 Length=2082711 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || ||||| ||||| |||||||| || || | ||||||| Sbjct 1620227 ACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATCAGACAGTGTGCGACCATCTTCC 1620286 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || || ||||| ||| | || | |||||||||||| || | |||||||| || | Sbjct 1620287 AACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCTGGTGGAATACCTTCTTTATCTTGA 1620346 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| | ||| ||||| ||| | ||| |||||||| Sbjct 1620347 ATTTTAGCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCTAAGGTGATGGTTTTT 1620406 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||||||||| || || ||||| Sbjct 1620407 CCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 176/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 19954 ATAAAATTTAAATATATTTTA--TCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGT 20011 ||| |||||| || |||| | | ||||| || || || |||| || | ||||| Sbjct 1618583 ATATAATTTAGGAATGCTTTAATTTAGTTTCCGCCACGCAATCTCAGTACTAGATGTAAA 1618642 Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || ||||| || || || || ||||| || || | ||||||||||||||| || Sbjct 1618643 GTTGATTCCTTCTGAATATTATAATCTGACAAGGTGCGACCATCTTCCAATTGTTTCCCT 1618702 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 || |||| | ||| || || || || | ||||| ||||| |||||| |||| Sbjct 1618703 GCGAAAATCAACCTTTGCTGGTCAGGTGGTATTCCTTCCTTGTCTTGAATTTTCGCTTTC 1618762 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| || || ||||| ||| | ||||||||||| || ||||| ||| Sbjct 1618763 ACATTTTCAATAGTGTCAGATGGTTCAACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTT 1618822 Query 20192 TTGACAAAAATTTGCAT 20208 || ||||| |||||||| Sbjct 1618823 TTCACAAATATTTGCAT 1618839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | ||| | || | ||||| ||||||||||| || || ||||| || Sbjct 1619751 TTCCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGATATTGTAGTCAG 1619810 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || ||| | ||||||||| || ||||| ||| | || | ||||||||||| | Sbjct 1619811 ACAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTGTTGATCTGGTG 1619870 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| |||||| | | | | || |||||| Sbjct 1619871 GAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCTATCGTGTCAGACGGTTCCA 1619930 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||||||| || || || || || || ||||| || |||||| Sbjct 1619931 CTTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCATT 1619980 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || || || || ||||| || |||||||| | |||| ||||||| Sbjct 1620455 ACTAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAGATAGAGTTCGGCCATCTTCC 1620514 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || || || || ||| ||||||| | ||| ||||| || | ||||| || || Sbjct 1620515 AACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGG 1620574 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| || ||| || ||| ||| | ||||| ||||| Sbjct 1620575 ATTTTGGCTTTTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTT 1620634 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || |||| ||||| ||||||||||||||| Sbjct 1620635 CCAGTCAGAGTTTTCACAAAAATTTGCATT 1620664 >seq252 Length=802098 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || || | |||||| |||| |||||||||||||||||||| ||||| Sbjct 443916 CCTCCTCTTAGTCTGAGCACCAAGTGTAAAGTAGATTCTTTTTGTATGTTATAATCAGAA 443857 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | |||| | ||||||||| || || || ||| |||| | ||||| ||||| Sbjct 443856 AGAGTTCTGTTATCTTCCAACTGCTTACCGGCAAAAATTAATCTCTGCTGATC 443804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419502634428897