Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq33 145 7e-30 >seq33 Length=2490231 Score = 145 bits (160), Expect = 7e-30 Identities = 146/187 (78%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||||||||||||| | ||| || ||||| || || |||| ||||||||| || ||||| Sbjct 181688 AATATAAGTATCTATGAGTAAACTGTACATCTCAGAGTGAACATTTTCCATTGCAATTTG 181629 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 |||||| ||||||||||| || || | ||| |||||||| || | ||| || || ||| Sbjct 181628 GAAACCGTAAAAACATCTTGCTTCAGTTACTTGAACTTCTTGACT-AAACCTCTCAACTA 181570 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 ||||||| ||||| || || ||| |||||||| ||||| | || || |||||| | Sbjct 181569 AGTTTTCATTAACAATTCCATCAGAGGCAGCAAAGAAAGCCAATACATGAGAAATAAAAT 181510 Query 13599 ttttttC 13605 |||||| Sbjct 181509 GTTTTTC 181503 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042 || ||||||||||||||||| ||||||||||||| || || |||||||| || | || | Sbjct 182929 CTATCAGCAACAAACTCTATATACTGTTTCATTAGCTCGCAATTCATTCCAATCATTTCT 182870 Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC 13089 || |||| |||||||| | ||| | || || ||| | ||||| || Sbjct 182869 ACTGGCAAGGCTTCTGTGAGAAATTCCTTCTCAATAACCACTGCATC 182823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430895537786874