Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq1601 228 3e-55 >seq1601 Length=30922 Score = 228 bits (252), Expect = 3e-55 Identities = 384/547 (70%), Gaps = 9/547 (2%) Strand=Plus/Plus Query 22197 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22256 |||||||| ||||| || || ||||| || | || || | |||||||| ||| ||| Sbjct 8271 CCCTGGATAGGCGGTAAACGGCGACTGGCAAAACAGATTTTACCGCGCTTCCCGGCGCAT 8330 Query 22257 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-GACCGCCAGC 22315 ||| ||||| ||| || |||| ||||||||| | ||| ||| | |||| Sbjct 8331 ACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTTACCCAGT 8390 Query 22316 CAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCA 22375 ||| |||||||| ||||||||||||||||||||||| || || ||||| || | | Sbjct 8391 AAGGCG-GAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTGCTGAA 8449 Query 22376 GCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTT 22435 |||||||| |||||||| |||| ||||| |||||||||||| |||||| | ||| Sbjct 8450 ACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTA 8509 Query 22436 CGAGTGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACATCCAG-CGTGCGGCACGCT 22494 | ||| | || |||| | || ||| | ||||| | || || ||||| | | Sbjct 8510 TCAATGGTTAAACATTACGCCGACCGAGACCTTAACCGATAGGAAGCCGCGCGGCCTGTT 8569 Query 22495 TCTACTACCTGCAAAAA-AGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACG 22553 |||| |||||||||||| || | || ||||| || | | | || || ||||| | Sbjct 8570 TCTATTACCTGCAAAAACAGGCG-TTCGGCGGTAAAGTCGCCGAACACACCTTCGGCATT 8628 Query 22554 GCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCG 22613 || || || | | ||| ||||||||||||| ||||| ||||| ||||| ||| || Sbjct 8629 GCCACCACCAGAGGGCCACGCCTGAACCTGCTACGCATGGAAGAGGAGCTGTCGCTCGCT 8688 Query 22614 CACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGATC 22671 || | || | || || | | ||| || | |||||||| | |||||||| | | Sbjct 8689 CATCTGCGATTGTCACGCA--CCACCATTGAACAAATCGATTGGTCAACCTGCATTGCCC 8746 Query 22672 GTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGGT 22731 |||| || || ||||||||||| || ||| ||| |||||||| | | ||||| || | Sbjct 8747 GTTATGACCGTCCGCACACGCTCTTTTACTGTGACCCGCCGTATTGGGGTACTGAGGGCT 8806 Query 22732 ACGGCGT 22738 | ||||| Sbjct 8807 ATGGCGT 8813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175411946384238