Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq10505 260 4e-65 seq2192 253 6e-63 seq1601 174 4e-39 seq1577 167 6e-37 seq3142 161 3e-35 >seq10505 Length=1270 Score = 260 bits (288), Expect = 4e-65 Identities = 223/273 (82%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 32036 GTTGGCGTAGGCCAGCCAGAACGTTCGATCTCGGATGTGCGGGGCACCGACGCCCGCAGA 32095 || ||||||||||| |||| ||| || || ||||| ||||||||||||||||||||||| Sbjct 272 GTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGGGCACCGACGCCCGCAGA 213 Query 32096 CGGAAACGGGACACACCCATAGGCGTAGTCCAGCGCTTCCACGTCAGTTTGTACAAGGTC 32155 ||||||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct 212 CGGAAACGGCACACACCCGAAGGCGTAGTCCACGGCTTCCAGGTCAGCCTGTACAAGGTC 153 Query 32156 GATCCAGTCGTCGACAGCGCTGCTCGCAACCTGTTCTCCAAACACC-ACTGCAGGTCGGC 32214 || |||| || || |||||| ||||||||||| ||||| || ||| |||| |||| Sbjct 152 GAACCAGAGGTTTGCATGGCTGCTTGCAACCTGTTCACCAAAAACGTACT-CAGGGCGGC 94 Query 32215 GCTCAGCGATGAGCCAGTGCCAGTGCGGCCAGAGGTGCCGCTCGTCATCAAACCCGCCAC 32274 || |||||||||||| | |||||||| ||||||||||||| ||||||||| | Sbjct 93 ACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCCGCTCGTCATAAAACCCGCCGC 34 Query 32275 CTTTGCCTGCCGCGGAGAAAGGTTGGCACGGGC 32307 | |||||||||||| |||||| ||||| |||| Sbjct 33 CCTTGCCTGCCGCGCTGAAAGGCTGGCAGGGGC 1 Score = 196 bits (216), Expect = 1e-45 Identities = 143/166 (86%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 31554 ATGAACGCAGTTGTCGCTTCGCCATTGACCGCGTTTCCGTAGGCGCGCAGTCGTCCCACT 31613 |||||||| ||| ||| || | |||| ||||||||||||||||||||||||||||| Sbjct 526 ATGAACGCTTTTGCCGCCTCCACGTTGATAGCGTTTCCGTAGGCGCGCAGTCGTCCCACG 467 Query 31614 CGACCGGGAGCCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCA 31673 || || | |||||| |||||||||||||| ||||||||||||||||||||||||| || Sbjct 466 CGGTTGGTAACCCCATAAGCCAGCGGGAATGCGCCGGGTTCAACTGGCCGCCACTTTTCA 407 Query 31674 TCCCGGCAGAGCAGCCAGTCAGCATCGCGCCAGAAGCCGTTAGCCG 31719 |||||||| || ||||||||||| || ||||||||||||||| ||| Sbjct 406 TCCCGGCACAGGAGCCAGTCAGCCTCTCGCCAGAAGCCGTTAACCG 361 >seq2192 Length=16777 Score = 253 bits (280), Expect = 6e-63 Identities = 221/272 (81%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 32036 GTTGGCGTAGGCCAGCCAGAACGTTCGATCTCGGATGTGCGGGGCACCGACGCCCGCAGA 32095 || ||||||||||| |||| ||| || || ||||| ||||||||||||||||||||||| Sbjct 16507 GTCGGCGTAGGCCACCCAGTACGCCCGGTCGCGGATATGCGGGGCACCGACGCCCGCAGA 16566 Query 32096 CGGAAACGGGACACACCCATAGGCGTAGTCCAGCGCTTCCACGTCAGTTTGTACAAGGTC 32155 ||||||||| |||||||| |||||||||||| ||||||| ||||| ||||||||||| Sbjct 16567 CGGAAACGGCACACACCCGAAGGCGTAGTCCACGGCTTCCAGGTCAGCCTGTACAAGGTC 16626 Query 32156 GATCCAGTCGTCGACAGCGCTGCTCGCAACCTGTTCTCCAAACAC-CACTGCAGGTCGGC 32214 || |||| || || |||||| ||||||||||| ||||| || ||| |||| |||| Sbjct 16627 GAACCAGAGGTTTGCATGGCTGCTTGCAACCTGTTCACCAAAAACGTACT-CAGGGCGGC 16685 Query 32215 GCTCAGCGATGAGCCAGTGCCAGTGCGGCCAGAGGTGCCGCTCGTCATCAAACCCGCCAC 32274 || |||||||||||| | |||||||| ||||||||||||| ||||||||| | Sbjct 16686 ACTGGCTGATGAGCCAGTGAAAAGCGGGCCAGAGATGCCGCTCGTCATAAAACCCGCCGC 16745 Query 32275 CTTTGCCTGCCGCGGAGAAAGGTTGGCACGGG 32306 | |||||||| ||| |||||| ||||| ||| Sbjct 16746 CCTTGCCTGCTGCGCTGAAAGGCTGGCAGGGG 16777 Score = 196 bits (216), Expect = 1e-45 Identities = 143/166 (86%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 31554 ATGAACGCAGTTGTCGCTTCGCCATTGACCGCGTTTCCGTAGGCGCGCAGTCGTCCCACT 31613 |||||||| ||| ||| || | |||| ||||||||||||||||||||||||||||| Sbjct 16253 ATGAACGCTTTTGCCGCCTCCACGTTGATAGCGTTTCCGTAGGCGCGCAGTCGTCCCACG 16312 Query 31614 CGACCGGGAGCCCCATGAGCCAGCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCA 31673 || || | |||||| |||||||||||||| ||||||||||||||||||||||||| || Sbjct 16313 CGGTTGGTAACCCCATAAGCCAGCGGGAATGCGCCGGGTTCAACTGGCCGCCACTTTTCA 16372 Query 31674 TCCCGGCAGAGCAGCCAGTCAGCATCGCGCCAGAAGCCGTTAGCCG 31719 |||||||| || ||||||||||| || ||||||||||||||| ||| Sbjct 16373 TCCCGGCACAGGAGCCAGTCAGCCTCTCGCCAGAAGCCGTTAACCG 16418 >seq1601 Length=30922 Score = 174 bits (192), Expect = 4e-39 Identities = 287/409 (70%), Gaps = 14/409 (3%) Strand=Plus/Plus Query 32036 GTTGGCGTAGGCCAGCCAGAACGTTCGATCTCGGATGTGCGGGGCACCGACGCCCGCAGA 32095 || ||||| ||||| |||| | ||| | |||| ||||||| ||||||| |||||||| Sbjct 15117 GTGGGCGTCGGCCACCCAGTAAAGTCGTTGTCGGCTGTGCGGCGCACCGAAGCCCGCAGC 15176 Query 32096 -CGGAAACGGGACACACCCATAGGCGTAGTCCAGCGCTTCCACGTCAGTTTGTACAAGGT 32154 | ||| | | | | |||||||| | ||||||| |||| | |||||||||| Sbjct 15177 GCATAAATCAAGCGCTGCTGT-GGCGTAGTTCTCTGCTTCCAGGTCAATCTGTACAAGGT 15235 Query 32155 CGATCCAGTCGT---CGACAGCGCTGCTCGCAACCTGTTCTCCAAACACCACTGCAGGTC 32211 ||| ||| || || ||| ||| |||||||| || ||||| | || ||||| Sbjct 15236 CGAGCCAAGCGAGTCCGTCAGGGCTT---GCAACCTGCTCACCAAAGATAACGTCAGGTT 15292 Query 32212 GGCGCTCAGCGATGAGCCAGTGCCAGTGCG---GCCAGAGGTGCCGCTCGTCATCAAACC 32268 || || |||||| ||| || || |||| | | ||||||||||| |||| | Sbjct 15293 TGCACTGCTGGATGAG---GTGGAAGAACGCGGGCCATAAGCGCCGCTCGTCAGCAAATC 15349 Query 32269 CGCCACCTTTGCCTGCCGCGGAGAAAGGTTGGCACGGGCATGATCCGGTCCACACGGGGC 32328 | || |||||||||| | |||||| |||||||| || || ||||||||||| Sbjct 15350 CCTTTCCCTTGCCTGCCGGGCTGAAAGGCTGGCACGGACAACTGCCTGTCCACACGGGTT 15409 Query 32329 GATCGTCGGGCCAGCCGGCGCGCCGCAGTGCGTAGGACCACACGCCGATGCCGGCGAAGA 32388 ||| |||||||||| | ||||| ||||| ||||| |||||| |||||||||| Sbjct 15410 TATCATCGGGCCAGCACACTTTTCGCAGGGCGTATGACCAGGTGCCGATTCCGGCGAAGA 15469 Query 32389 AATGGCACTGGCTGTATCCGCGCAGGTCATCAGGTTGGACATCCTCGAT 32437 |||| |||||| |||| | | | ||||| |||| | |||||||| Sbjct 15470 AATGACACTGGGTGTAGCTCTGTAACTCATCGGGTTTAATCTCCTCGAT 15518 Score = 158 bits (174), Expect = 3e-34 Identities = 122/145 (84%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 31576 CATTGACCGCGTTTCCGTAGGCGCGCAGTCGTCCCACTCGACCGGGAGCCCCATGAGCCA 31635 |||||| | || ||||||||||||||||||||||||| || | ||||| ||||| Sbjct 14750 CATTGAGGGTATTACCGTAGGCGCGCAGTCGTCCCACTCTGTTGGTAATCCCATCAGCCA 14809 Query 31636 GCGGGAATGTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGAGCAGCCAGTCAG 31695 ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 14810 GCGGGCGTGTGCCGGGTTCAACTGGCCGCCATTTTCCATCCCGGCAGCAGAGCCAGTCAG 14869 Query 31696 CATCGCGCCAGAAGCCGTTAGCCGG 31720 | || ||||||||||||| || ||| Sbjct 14870 CCTCTCGCCAGAAGCCGTGAGTCGG 14894 >seq1577 Length=31499 Score = 167 bits (184), Expect = 6e-37 Identities = 221/307 (72%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 26127 GTTTCATGGCGTCGAGCAGGATGTCCTGCACGGCGCGCTTCGTTTCGCGGCGCTCGACGA 26186 ||||||| || || |||||||| ||||||||| || || | ||||| || || | | Sbjct 17441 GTTTCATTGCATCCAGCAGGATATCCTGCACGTTTCGTTTTGAATCGCGCCGTTCCATCA 17500 Query 26187 CGTCCTCGTCGATCGTGTCGCGCGCGATGATCGGGTAGATGAAAACGGGGCGGCGGTGGC 26246 | || || | |||||| ||||| || ||| || || || |||||| || | Sbjct 17501 CCAGTTCATCTACGGTGTCGGCGGCGATAATATGGTGAATAAATACCGGGCGGTTATGCC 17560 Query 26247 CGGCCTGCAGCTGGCGCACGGGTCCGATCCGCTCGACGATCTGCAGGTATTCCTCGAGGT 26306 | ||||| | |||||| || ||||| || |||| || || |||| | || || | Sbjct 17561 CCGCCTGTATCTGGCGTGTTGGCCCGATACGTTCGATAATTTGTTGGTACTGTTCCAGAT 17620 Query 26307 TCCACCAGTGGCCGAAGACCGCAAGGATGTTGCCGCCGTCCTGCAGGTTCAGGCCGTGGC 26366 ||||||||| ||| | | | |||||||| ||||| ||||| | ||| |||||||||| Sbjct 17621 CCCACCAGTGCGAGAAAAACACCAGGATGTTTCCGCCATCCTGTAAGTTAAGGCCGTGGC 17680 Query 26367 CGGCGCTGGCCGGGTGCGCGAACATCACCGGGATCTTGCCAGCGTTCCAGTCGCGGATCG 26426 | ||||| || || || ||||| | ||||||||| || || || ||||||||||| | || Sbjct 17681 CTGCGCTAGCTGGATGAGCGAATAGCACCGGGATTTTACCGGCATTCCAGTCGCGCAGCG 17740 Query 26427 TCTGCGG 26433 |||| || Sbjct 17741 TCTGTGG 17747 >seq3142 Length=9584 Score = 161 bits (178), Expect = 3e-35 Identities = 220/306 (72%), Gaps = 1/306 (0%) Strand=Plus/Plus Query 26129 TTCATGGCGTCGAGCAGGATGTCCTGCACGGCGCGCTTCGTTTCGCGGCGCTCGACGACG 26188 |||||||| || |||||||| ||||||||| ||| || | ||||| || || | || Sbjct 5941 TTCATGGCTTCCAGCAGGATATCCTGCACGTTGCGTTTTGAATCGCGCCGTTCCATCACC 6000 Query 26189 TCCTCGTCGATCGTGTCGCGCGCGATGATCGGGTAGATGAAAACGGGGCGGCGGTGGCCG 26248 ||||| | || ||| ||||| || ||| || | || |||||| || || Sbjct 6001 AGTTCGTCTACGGTATCGGCGGCGATAATATGGTGTATCCATACCGGGCGGTTATGCCCC 6060 Query 26249 GCCTGCAGCTGGCGCACGGGTCCGATCCGCTCGACGATCTGCAGGTATTCCTCGAGGTTC 26308 ||||| | |||||| || ||||| || |||| || || |||| | || || | | Sbjct 6061 GCCTGTATCTGGCGTGTTGGCCCGATACGTTCGATAATTTGTTGGTACTGTTCCAGATCC 6120 Query 26309 CACCAGTGGCCGAAGAC-CGCAAGGATGTTGCCGCCGTCCTGCAGGTTCAGGCCGTGGCC 26367 |||||||| ||| | | | |||||||| ||||| ||||| | ||| ||||||||||| Sbjct 6121 CACCAGTGCGAGAAAAAACACCAGGATGTTTCCGCCATCCTGTAAGTTAAGGCCGTGGCC 6180 Query 26368 GGCGCTGGCCGGGTGCGCGAACATCACCGGGATCTTGCCAGCGTTCCAGTCGCGGATCGT 26427 ||||| || || || ||||| | ||||||||| || || || ||||||||||| | ||| Sbjct 6181 TGCGCTAGCTGGATGAGCGAATAGCACCGGGATTTTACCGGCATTCCAGTCGCGCAGCGT 6240 Query 26428 CTGCGG 26433 ||| || Sbjct 6241 CTGTGG 6246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135579770038938