Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq220 122 5e-23
seq448 120 2e-22
seq118 120 2e-22
>seq220
Length=889906
Score = 122 bits (134), Expect = 5e-23
Identities = 80/88 (91%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | || ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 538317 AAAAAATTACAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 538375
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531
||||| ||||||||||||||||||||||
Sbjct 538376 GCTCTAACCAACTGAGCTAATGGGCCGT 538403
Score = 114 bits (126), Expect = 7e-21
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| ||| | |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 533843 AATAAACAATACA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 533786
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 533785 GACGCTCTAACCAACTGAGCTAATGGGCC 533757
>seq448
Length=393124
Score = 120 bits (132), Expect = 2e-22
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||||| || |||||| | ||||||||||| |||||||||| |||||||||||||||
Sbjct 173037 AGAATAAAATAAAAATTAC-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 172979
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||||||||||||||||||
Sbjct 172978 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 172944
>seq118
Length=1428529
Score = 120 bits (132), Expect = 2e-22
Identities = 80/89 (90%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1200231 AAAAAAAAAT--ACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 1200174
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 1200173 GACGCTCTAACCAACTGAGCTAATGGGCC 1200145
Score = 120 bits (132), Expect = 2e-22
Identities = 80/89 (90%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1202257 AAAAAAAAAT--AGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 1202200
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 1202199 GACGCTCTAACCAACTGAGCTAATGGGCC 1202171
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261438497837812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |