Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq1601 150 4e-32 >seq1601 Length=30922 Score = 150 bits (166), Expect = 4e-32 Identities = 264/379 (70%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 |||||| || ||||| || || ||| ||||| | | ||||| || || |||||| | Sbjct 11320 CATGCGATCAATGTCATCCAGCGTC-AGGCCCACGATGGTGCCGCCTTCTGCAAGTTCGG 11262 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | ||||| ||||| |||||| | |||||||| | || || || ||||||||| || | Sbjct 11261 CCAGATCTTCATCGTCTTCGGTCATCAGTTCAAAGAGTTTAGCTTTCCCCAAATGGGCAA 11202 Query 7904 ACGTTGTCCGTTTTGACTCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATCC 7963 |||| || ||||| | || || ||||| ||||| | || || | ||| ||| Sbjct 11201 GCGTTTGCCCATTTGATTGCAAGGCTGGAGATGTATATTTTAAAGCGGCTTTCATGATCA 11142 Query 7964 GGCGCGCTGCGCGCTCATGT-ATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCG 8022 || || | | | | || || || || | |||||| || || | | || || || Sbjct 11141 AGCTGGCAGTTCTC-CGTGCCATGCCTAATTTTTCAGTAACAATTTTTATAAACTCCCCA 11083 Query 8023 TGGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCC 8082 || || |||| |||||| || | ||||| ||||| || || |||||||||||||| || Sbjct 11082 TGCGGTTCATTCTCTTTAAGAATAATCAGTCGCTTGCCAGCCTCCAGCATGGCTTCGGCA 11023 Query 8083 GACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCG 8142 ||| ||||| |||||||||||||||| || | ||| || | || || ||||| Sbjct 11022 CTCTGTGCCATATAGAAGCGCGCCTCATGTACAATGCGCTCACGCTGATAGGGCAGGCCC 10963 Query 8143 TCGCCGAACTGCGCCATGA 8161 || ||| ||| |||||| Sbjct 10962 TCACCGTACTTTTCCATGA 10944 Score = 145 bits (160), Expect = 2e-30 Identities = 366/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCTTTTCCCACGCCAC 26098 ||||||||||| || || || || || || | | || || |||| ||||| || Sbjct 8271 CCCTGGATAGGCGGTAAACGGCGACTGGCAAAACAGATTTTACCGCGCTTCCCGGCGCAT 8330 Query 26099 TCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCCG 26158 ||||||| || ||||| || || | |||||| || ||||| | | | | || Sbjct 8331 ACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTCTTTAT---GAAGTTACCC 8387 Query 26159 GCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGTT 26218 | | ||| ||| | ||||| ||||||||||| |||||||| || || || || | Sbjct 8388 AGTAAGGCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTCTATCGGGTGCTG 8447 Query 26219 CAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGC---TCAGCTCTCGCCAG 26275 | || |||||||||||||| | |||||||| |||||||||| ||||| | || | Sbjct 8448 AAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGC-CGGGCGAT 8506 Query 26276 GTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAG-CGCGCCGC 26334 || |||| ||| | | || | | | || || | ||||| | || ||||| || Sbjct 8507 GT-ATCAA-TGGTTAAACATTACGCCGACCGAGACCTTAACCGATAGGAAGCCGCGCGGC 8564 Query 26335 GCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGG 26394 | || || |||||||| | ||||||||||| |||| | || | || ||| Sbjct 8565 CTGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGTAAAGTCGCCGAACACACCTTCGG 8624 Query 26395 AACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTCGGC 26454 | ||||||||| | ||| | || |||||| | ||| ||||||| |||||| Sbjct 8625 CATTGCCACCACCAGAGGGCCACGCCTGAACCTGCTACGCATGGAAGAGGAGCTGTCGCT 8684 Query 26455 GGCTCACCTGCGGCTGAGCAATACCTACATCGAGCACCTCAGCTGGCAGGACTGCCTCCG 26514 ||||| ||||| || ||| ||| || || || ||| |||| | Sbjct 8685 CGCTCATCTGCGATTGTCACGCACCACCATTGAACAAATCGATTGGTCAACCTGCATTGC 8744 Query 26515 GCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGACGGAGGG 26574 || ||||| || |||||| |||||||| ||||||||||| |||| || ||||| Sbjct 8745 CCGTTATGACCGTCCGCACACGCTCTTTTACTGTGACCCGCCGTATTGGGGTACTGAGGG 8804 Query 26575 CTATGGCGTG 26584 |||||||||| Sbjct 8805 CTATGGCGTG 8814 Score = 136 bits (150), Expect = 1e-27 Identities = 246/357 (69%), Gaps = 2/357 (1%) Strand=Plus/Plus Query 7810 AGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAACGAGATCGTCATCATCTTCGCTGATC 7869 ||||| || | ||||| || || |||||| | | ||||| ||||| |||||| | ||| Sbjct 9603 AGGCCCGCGATGGTGCCGCCTTCTGCAAGTTCGGCCAGATCTTCATCGTCTTCGGTCATC 9662 Query 7870 AGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACAACGTTGTCCGTTTTGACTCCAGTGCA 7929 ||||| | || || || ||||||||| || | |||| || ||||| | || || Sbjct 9663 AGTTCAAAGAGTTTAGCTTTCCCCAAATGGGCAAGCGTTTGCCCATTTGATTGCAAGGCT 9722 Query 7930 GGAGACAGGTATTTGAGCGCCGCCTGCATCATCCGGCGCGCTGCGCGCTCATGT-ATCCC 7988 ||||| ||||| | || || | ||| ||| || || | | | | || || || Sbjct 9723 GGAGATGTATATTTTAAAGCGGCTTTCATGATCAAGCTGGCAGTTCTC-CGTGCCATGCC 9781 Query 7989 CAACTGTTCAGTGACGATCTGAGTGAAGTCGCCGTGGGGCTCATGCTCTTTCAGCACGAT 8048 || | |||||| || || | | || || || || || |||| |||||| || | || Sbjct 9782 TAATTTTTCAGTAACAATTTTTATAAACTCCCCATGCGGTTCATTCTCTTTAAGAATAAT 9841 Query 8049 CAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCCGACTGGGCCATGTAGAAGCGCGCCTC 8108 ||| ||||| || || |||||||||||||| || ||| ||||| || |||||||| || Sbjct 9842 CAGTCGCTTGCCAGCCTCCAGCATGGCTTCGGCACTCTGTGCCATATAAAAGCGCGCTTC 9901 Query 8109 ATTGACCACGCGGATGCGGTCGTAAGGGAGGCCGTCGCCGAACTGCGCCATGACCTC 8165 || || | | | || || || || || |||||||| ||||||| ||||| Sbjct 9902 ATGCACAATTCTTTCCCTTTCATAGGGTAGCCCATCGCCGAAACGCGCCATCACCTC 9958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122859068581194