Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq57 156 4e-33
seq504 111 1e-19
seq252 102 7e-17
>seq57
Length=2082711
Score = 156 bits (172), Expect = 4e-33
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||||||||||| || | || | || | ||| ||||| || || |
Sbjct 1619285 AAAATTTGCATTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATA 1619344
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|||||||| | |||| | ||| || ||||| |||||| | |||||||| |||||
Sbjct 1619345 TTATAATCTGAGAGAGTGCGGCCATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGT 1619404
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|| ||||| ||||| |||||||| || | |||||| ||||| || ||| |||||||
Sbjct 1619405 TGGTCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCCTTAACATTTTCGATAGTGTCA 1619464
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || |||| || ||||| ||||| |||||||| |||||||||||||||||
Sbjct 1619465 GATGGTTCAACTTCAAGTGTAATGGTCTTTCCTGTAAGAGTCTTCACAAAGATCTGCAT 1619523
Score = 143 bits (158), Expect = 2e-29
Identities = 182/249 (73%), Gaps = 1/249 (0%)
Strand=Plus/Plus
Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818
||||||| |||| ||| || ||||||||| | || | || | || | |||||||||
Sbjct 1620871 GGTTTTTACAAAAATTTGCATTCCTCCTCTTAGTCTGAGTACAAGATGTAGAGTAGATTC 1620930
Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878
|| || | |||||||| | |||| | ||| || | ||| |||||| | |||||
Sbjct 1620931 TTTCTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGAT 1620990
Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938
||||||||| || ||||| ||||| |||||||| || | |||||| ||||| || |
Sbjct 1620991 TAATCTTTGTTGGTCTGGCGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTC 1621050
Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998
|| ||||||| | || || |||| || || |||||||| ||||| || || || ||
Sbjct 1621051 GATTGTGTCAGAAGGTTCAACTTCAAGTGTAATCGTTTTTCCTGTAAGGGTCTTGACGAA 1621110
Query 94999 GATCTGCAT 95007
|||||||||
Sbjct 1621111 GATCTGCAT 1621119
Score = 127 bits (140), Expect = 2e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||||||||| || | || | || | ||||||||| || || |
Sbjct 1620652 AAAAATTTGCATTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAAT 1620711
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
|||||||| | |||| | ||| || | ||| |||||| | ||||||||||||||
Sbjct 1620712 ATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTG 1620771
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|| || || ||||| |||||||| || | ||||| ||||| ||| | | || ||
Sbjct 1620772 TTGGTCGGGTGGAATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATC 1620831
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || |||| || || ||||||||||| || ||||| ||||| || |||||
Sbjct 1620832 TGACGGCTCAACTTCAAGAGTAATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCAT 1620891
Score = 118 bits (130), Expect = 1e-21
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| ||| ||||| | ||| | ||||| ||||| || || ||||| || | || |||||
Sbjct 1621117 CATTCCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATC 1621176
Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894
| |||| || || ||| |||| ||| ||||| |||| ||||||| |||||||||
Sbjct 1621177 GG--ATAGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCA 1621234
Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954
||||| || ||||| || || | |||||| ||||| ||| | | ||| || | |
Sbjct 1621235 GGAGGGATTCCTTCCTTATCTTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGC 1621294
Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||| || || || || || || | ||||| || |||||||||||
Sbjct 1621295 TCAACTTCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839
||| || | ||||| || || | || ||||| |||||||| || | ||||||||
Sbjct 1618612 TCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGA 1618671
Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899
|| ||| ||| |||| ||||| || | || || || |||||||| || || ||
Sbjct 1618672 CAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGG 1618731
Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
|| ||||| ||||| | |||||| || || || | | |||||||| | || ||
Sbjct 1618732 TATTCCTTCCTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAAC 1618791
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || |||||||||||||| | |||||||||||| || |||||
Sbjct 1618792 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839
Score = 113 bits (124), Expect = 4e-20
Identities = 169/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||||||| | | | || | || ||||||||||| || || |
Sbjct 1619740 AAAAATTTGCATTCCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGAT 1619799
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
|| || || || |||| ||| |||| ||| || || ||||||| ||||| ||
Sbjct 1619800 ATTGTAGTCAGACAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTG 1619859
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|||||||| |||||||||||||| || | |||||| || || || | | |||||
Sbjct 1619860 TTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCTATCGTGTC 1619919
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || || | || ||||| |||||||| | || || ||||| ||||||||
Sbjct 1619920 AGACGGTTCCACTTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCAT 1619979
Score = 105 bits (116), Expect = 6e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||| || | || || |||||||| | || |||||
Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAG-- 1619582
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
|||| ||| | ||| || | ||| ||||| |||| || | | ||||||||||| |
Sbjct 1619583 ATAGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTG 1619642
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| |||||||| || | ||||| ||||| ||| | | || |||| | || |
Sbjct 1619643 GAATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAA 1619702
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||| || || ||||||||||| |||||||||||||| || |||||
Sbjct 1619703 CTTCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| ||| ||||| | || | ||||| ||||| || || || || || | || |||||
Sbjct 1620205 CATTCCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATC 1620264
Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894
|| |||| || ||| |||| ||| || || ||||||| || || || ||||||
Sbjct 1620265 AGACA--GTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCT 1620322
Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954
|| |||||||||||||| || | |||||| || || || | | || |||| |
Sbjct 1620323 GGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGT 1620382
Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | |||||||||||||| || | ||||| || || ||||||||
Sbjct 1620383 TCTACTTCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| || |||||||| | || ||||| |||| ||| | ||| |||| ||| ||||
Sbjct 1620467 GTGGACTCCTTTTGAATATTGTAATCAG--ATAGAGTTCGGCCATCTTCCAACTGCTTTC 1620524
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| |||| || | | ||||||||||| || || ||||| || || | ||||| || |
Sbjct 1620525 CAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTT 1620584
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | | ||| |||| | | || || |||| || || ||||||||||| ||||
Sbjct 1620585 TTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTTCCAGTCAGAG 1620644
Query 94989 TTTTCACAAAGATCTGCAT 95007
|||||||||| || |||||
Sbjct 1620645 TTTTCACAAAAATTTGCAT 1620663
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| || |||||||| | || ||||| |||| ||| | ||| |||| ||| ||||
Sbjct 1619099 GTGGACTCCTTTTGAATATTGTAATCAG--ATAGAGTTCGGCCATCTTCCAACTGCTTTC 1619156
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| |||| || | | ||||||||||| || || ||||| || || | ||||| || |
Sbjct 1619157 CAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTT 1619216
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | | ||| |||| | | || || |||| || || ||||||||||| ||||
Sbjct 1619217 TAACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTTCCAGTCAGAG 1619276
Query 94989 TTTTCACAAAGATCTGCAT 95007
||||||| || || |||||
Sbjct 1619277 TTTTCACGAAAATTTGCAT 1619295
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/210 (70%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857
|||| ||||| || || || || || | ||||||||| | || ||| || ||| ||
Sbjct 1618860 CAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAG--AAAGAGTTCGACCATCTTC 1618917
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| |||||| || | || || || ||||||||||| ||||| || ||||| || || |
Sbjct 1618918 CAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTG 1618977
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || || || | | || |||| | || || || | || || |||||
Sbjct 1618978 AATCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTT 1619037
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || | ||||||||| || ||||||||
Sbjct 1619038 TCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
|| ||||||||||| || || || | || | ||| ||||| || || | || |||||
Sbjct 1619977 CATTCCTCCTCTCAGTCTTAAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATC 1620036
Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896
| ||| ||| || | |||||| || | || || || |||||||| || ||
Sbjct 1620037 AGAAAGGGTGCGCCCATCTTCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGG 1620096
Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956
|| || ||||| || || | ||| || || || || | | ||||||| | ||
Sbjct 1620097 TGGTATTCCTTCCTTATCTTGAATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTC 1620156
Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| |||| || || || ||||| |||||||| || || |||||||||||
Sbjct 1620157 TACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCAT 1620207
>seq504
Length=327254
Score = 111 bits (122), Expect = 1e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || |||||||| || |||| || ||||||||||||||||||||||| ||||||||
Sbjct 214138 ATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTT 214197
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || |||||||| || | | ||||| | | | || || |||| || ||
Sbjct 214198 ATCTTGGATCTTTGCCTTAACATTTTCAATTGTGTCTGAGGGTTCAACCTCAAGGGTAAT 214257
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || | |||||||||||| || |||||
Sbjct 214258 TGTTTTACCCGTCAAAGTTTTCACAAAAATTTGCAT 214293
>seq252
Length=802098
Score = 102 bits (112), Expect = 7e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | || | ||||||||| ||||||||||| ||||| | |||||||||
Sbjct 443916 CCTCCTCTTAGTCTGAGCACCAAGTGTAAAGTAGATTCTTTTTGTATGTTATAATCAGAA 443857
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || ||| |||| ||| || ||| |||| |||||||| |||||||| |||||
Sbjct 443856 AGAGTTCTGTTATCTTCCAACTGCTTACCGGCAAAAATTAATCTCTGCTGATCAGGAGGT 443797
Query 94901 ATACCT 94906
|| |||
Sbjct 443796 ATTCCT 443791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448198532605320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |