Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq57 156 4e-33 seq504 111 1e-19 seq252 102 7e-17 >seq57 Length=2082711 Score = 156 bits (172), Expect = 4e-33 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||||| || | || | || | ||| ||||| || || | Sbjct 1619285 AAAATTTGCATTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTTGATTCTTTCTGGATA 1619344 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| | |||| | ||| || ||||| |||||| | |||||||| ||||| Sbjct 1619345 TTATAATCTGAGAGAGTGCGGCCATCTTCTAGCTGCTTTCCGGCGAAGATTAACCTTTGT 1619404 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||| |||||||| || | |||||| ||||| || ||| ||||||| Sbjct 1619405 TGGTCTGGTGGAATTCCTTCTTTATCTTGAATTTTGGCCTTAACATTTTCGATAGTGTCA 1619464 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || ||||| ||||| |||||||| ||||||||||||||||| Sbjct 1619465 GATGGTTCAACTTCAAGTGTAATGGTCTTTCCTGTAAGAGTCTTCACAAAGATCTGCAT 1619523 Score = 143 bits (158), Expect = 2e-29 Identities = 182/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 94760 GGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||||||| |||| ||| || ||||||||| | || | || | || | ||||||||| Sbjct 1620871 GGTTTTTACAAAAATTTGCATTCCTCCTCTTAGTCTGAGTACAAGATGTAGAGTAGATTC 1620930 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 || || | |||||||| | |||| | ||| || | ||| |||||| | ||||| Sbjct 1620931 TTTCTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGAT 1620990 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| || ||||| ||||| |||||||| || | |||||| ||||| || | Sbjct 1620991 TAATCTTTGTTGGTCTGGCGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTC 1621050 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || ||||||| | || || |||| || || |||||||| ||||| || || || || Sbjct 1621051 GATTGTGTCAGAAGGTTCAACTTCAAGTGTAATCGTTTTTCCTGTAAGGGTCTTGACGAA 1621110 Query 94999 GATCTGCAT 95007 ||||||||| Sbjct 1621111 GATCTGCAT 1621119 Score = 127 bits (140), Expect = 2e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||||||| || | || | || | ||||||||| || || | Sbjct 1620652 AAAAATTTGCATTCCTCCTCTCAGTCTGAGTACAAGATGTAGAGTAGATTCTTTCTGAAT 1620711 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| | |||| | ||| || | ||| |||||| | |||||||||||||| Sbjct 1620712 ATTATAATCTGAAAGAGTGCGGCCATCTTCTAACTGCTTTCCGGCGAAGATTAATCTTTG 1620771 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| |||||||| || | ||||| ||||| ||| | | || || Sbjct 1620772 TTGGTCGGGTGGAATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATC 1620831 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||||||||| || ||||| ||||| || ||||| Sbjct 1620832 TGACGGCTCAACTTCAAGAGTAATAGTTTTTCCAGTCAGGGTTTTTACAAAAATTTGCAT 1620891 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| ||||| | ||| | ||||| ||||| || || ||||| || | || ||||| Sbjct 1621117 CATTCCACCTCTGAGTCGAAGAACCAAATGCAACGTGGACTCCTTCTGTATATTGTAATC 1621176 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | |||| || || ||| |||| ||| ||||| |||| ||||||| ||||||||| Sbjct 1621177 GG--ATAGGGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATTAATCGTTGCTGATCA 1621234 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 ||||| || ||||| || || | |||||| ||||| ||| | | ||| || | | Sbjct 1621235 GGAGGGATTCCTTCCTTATCTTGAATTTTAGCCTTTACGTTTTCAATAGTATCTGAAGGC 1621294 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| || || || || || || | ||||| || ||||||||||| Sbjct 1621295 TCAACTTCAAGAGTTATTGTCTTCCCCGTCAACGTTTTTACGAAGATCTGCAT 1621347 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | ||||| || || | || ||||| |||||||| || | |||||||| Sbjct 1618612 TCCGCCACGCAATCTCAGTACTAGATGTAAAGTTGATTCCTTCTGAATATTATAATCTGA 1618671 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| ||| |||| ||||| || | || || || |||||||| || || || Sbjct 1618672 CAAGGTGCGACCATCTTCCAATTGTTTCCCTGCGAAAATCAACCTTTGCTGGTCAGGTGG 1618731 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| ||||| | |||||| || || || | | |||||||| | || || Sbjct 1618732 TATTCCTTCCTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGTGTCAGATGGTTCAAC 1618791 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||||||||| | |||||||||||| || ||||| Sbjct 1618792 TTCAAGAGTAATGGTTTTTCCAGTCAAAGTTTTCACAAATATTTGCAT 1618839 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||||| | | | || | || ||||||||||| || || | Sbjct 1619740 AAAAATTTGCATTCCTCCTCTAAGCCTTAGTACAAGATGTAAAGTAGATTCTTTCTGGAT 1619799 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || || |||| ||| |||| ||| || || ||||||| ||||| || Sbjct 1619800 ATTGTAGTCAGACAGAGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAATCTCTG 1619859 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| |||||||||||||| || | |||||| || || || | | ||||| Sbjct 1619860 TTGATCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCTATCGTGTC 1619919 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | || ||||| |||||||| | || || ||||| |||||||| Sbjct 1619920 AGACGGTTCCACTTCTAAGGTAATGGTCTTTCCAGTTAAGGTCTTAACAAATATCTGCAT 1619979 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| || | || || |||||||| | || ||||| Sbjct 1619525 CCCCCTCTGAGCCGAAGAACCAAATGAAGGGTGGACTCCTTTTGAATATTGTAATCAG-- 1619582 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | ||| || | ||| ||||| |||| || | | ||||||||||| | Sbjct 1619583 ATAGAGTTCGGCCATCTTCTAACTGCTTTCCAGCAAAAATAAGACGCTGCTGATCTGGTG 1619642 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | ||||| ||||| ||| | | || |||| | || | Sbjct 1619643 GAATTCCTTCTTTATCCTGGATTTTAGCCTTTACGTTCTCTATTGTATCAGACGGCTCAA 1619702 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || ||||||||||| |||||||||||||| || ||||| Sbjct 1619703 CTTCAAGAGTAATAGTTTTTCCAGTCAGAGTTTTCACAAAAATTTGCAT 1619751 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| ||||| | || | ||||| ||||| || || || || || | || ||||| Sbjct 1620205 CATTCCACCTCTGAGACGAAGAACCAAATGCAACGTGGACTCTTTCTGTATATTGTAATC 1620264 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 || |||| || ||| |||| ||| || || ||||||| || || || |||||| Sbjct 1620265 AGACA--GTGTGCGACCATCTTCCAACTGCTTGCCTGCAAAGATCAACCTCTGTTGATCT 1620322 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || |||||||||||||| || | |||||| || || || | | || |||| | Sbjct 1620323 GGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTATCAGATGGT 1620382 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||||||||| || | ||||| || || |||||||| Sbjct 1620383 TCTACTTCTAAGGTGATGGTTTTTCCGGTTAACGTTTTGACGAATATCTGCAT 1620435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || |||||||| | || ||||| |||| ||| | ||| |||| ||| |||| Sbjct 1620467 GTGGACTCCTTTTGAATATTGTAATCAG--ATAGAGTTCGGCCATCTTCCAACTGCTTTC 1620524 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| || | | ||||||||||| || || ||||| || || | ||||| || | Sbjct 1620525 CAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTT 1620584 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | ||| |||| | | || || |||| || || ||||||||||| |||| Sbjct 1620585 TTACATTTTCAATAGTATCAGAGGGCTCCACTTCAAGAGTAATTGTTTTTCCAGTCAGAG 1620644 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||||||||| || ||||| Sbjct 1620645 TTTTCACAAAAATTTGCAT 1620663 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || |||||||| | || ||||| |||| ||| | ||| |||| ||| |||| Sbjct 1619099 GTGGACTCCTTTTGAATATTGTAATCAG--ATAGAGTTCGGCCATCTTCCAACTGCTTTC 1619156 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| || | | ||||||||||| || || ||||| || || | ||||| || | Sbjct 1619157 CAGCAAAAATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTATCCTGGATTTTGGCTT 1619216 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | | ||| |||| | | || || |||| || || ||||||||||| |||| Sbjct 1619217 TAACATTTTCAATAGTATCAGAGGGCTCAACTTCAAGAGTAATTGTTTTTCCAGTCAGAG 1619276 Query 94989 TTTTCACAAAGATCTGCAT 95007 ||||||| || || ||||| Sbjct 1619277 TTTTCACGAAAATTTGCAT 1619295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| ||||| || || || || || | ||||||||| | || ||| || ||| || Sbjct 1618860 CAAGATGCAATGTTGACTCTTTCTGAATGTTATAATCAG--AAAGAGTTCGACCATCTTC 1618917 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 1618918 CAACTGTTTCCCAGCGAAAATCAACCTTTGCTGATCGGGAGGGATTCCTTCCTTATCTTG 1618977 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || || || | | || |||| | || || || | || || ||||| Sbjct 1618978 AATCTTAGCTTTTACATTTTCAATTGTATCAGAAGGTTCTACTTCTAAGGTAATCGTTTT 1619037 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||||||| || |||||||| Sbjct 1619038 TCCTGTTAAAGTTTTCACGAATATCTGCAT 1619067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||||| || || || | || | ||| ||||| || || | || ||||| Sbjct 1619977 CATTCCTCCTCTCAGTCTTAAGACAAGATGAAGAGTTGATTCTTTCTGAATATTGTAATC 1620036 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| ||| || | |||||| || | || || || |||||||| || || Sbjct 1620037 AGAAAGGGTGCGCCCATCTTCTAACTGTTTCCCAGCGAAAATCAACCTTTGCTGGTCAGG 1620096 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| || || | ||| || || || || | | ||||||| | || Sbjct 1620097 TGGTATTCCTTCCTTATCTTGAATCTTCGCTTTTACATTTTCAATTGTGTCAGAAGGTTC 1620156 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| || || || ||||| |||||||| || || ||||||||||| Sbjct 1620157 TACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTCTTAACGAAGATCTGCAT 1620207 >seq504 Length=327254 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || |||||||| || |||| || ||||||||||||||||||||||| |||||||| Sbjct 214138 ATCTTCTAGCTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTT 214197 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || |||||||| || | | ||||| | | | || || |||| || || Sbjct 214198 ATCTTGGATCTTTGCCTTAACATTTTCAATTGTGTCTGAGGGTTCAACCTCAAGGGTAAT 214257 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || | |||||||||||| || ||||| Sbjct 214258 TGTTTTACCCGTCAAAGTTTTCACAAAAATTTGCAT 214293 >seq252 Length=802098 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | ||||||||| ||||||||||| ||||| | ||||||||| Sbjct 443916 CCTCCTCTTAGTCTGAGCACCAAGTGTAAAGTAGATTCTTTTTGTATGTTATAATCAGAA 443857 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || ||| |||| ||| || ||| |||| |||||||| |||||||| ||||| Sbjct 443856 AGAGTTCTGTTATCTTCCAACTGCTTACCGGCAAAAATTAATCTCTGCTGATCAGGAGGT 443797 Query 94901 ATACCT 94906 || ||| Sbjct 443796 ATTCCT 443791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448198532605320