Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 183 5e-42 seq193 168 1e-37 seq145 168 1e-37 seq206 159 5e-35 seq587 116 6e-22 >seq4 Length=5636934 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | || || || || ||||| || |||||||| |||||||| Sbjct 250857 CGCTAAGCGTCATAGGAAGGTACTGCGTGACAATATCCAGGGCATCACCAAACCAGCTAT 250798 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| ||||||||||| |||||| |||||||| || | |||||||| | Sbjct 250797 ACGTCGTCTTGCTCGCCGTGGTGGAGTAAAGCGTATCTCTGGACTGATTTATGAAGAAAC 250738 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||||| | ||||| ||| ||| ||| || ||| || |||||| || Sbjct 250737 TCGAGGTGTGTTGAAGGTGTTCCTGGAGAACGTAATCAGAGACGCTGTCACCTATACTGA 250678 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| | ||||| | || ||||| | || |||||||| Sbjct 250677 GCACGCAAAGAGGAAGACAGTCACAGCTATGGACGTTGTGTATGCCCTTAAGCGTCAAGG 250618 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | || ||||||||| | ||| || Sbjct 250617 AAGAACTTTGTACGGTTTTGGAGGCTAAACT 250587 >seq193 Length=993407 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || |||||||| |||||||| ||| | || ||||| |||||| Sbjct 570406 CTGCGTGACAACATCCAGGGTATCACCAAACCAGCTATTCGTAGGCTTGCTCGCCGTGGT 570465 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| | |||||||| | |||||||||| | | | || ||||| | ||| Sbjct 570466 GGTGTAAAACGTATTTCTGGATTAATTTATGAAGAGACTAGAGGCGTGTTGAAAGTGTTC 570525 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||| |||||| | ||||| |||||||||||| | || || || Sbjct 570526 CTGGAGAACGTGATCAGAGATGCTGTTACGTATACTGAGCACGCTAAAAGGAAAACAGTT 570585 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || || || || ||||||||||| | | |||||||||||||| Sbjct 570586 ACCGCTATGGATGTAGTGTACGCTTTAAAACGTCAAGGTAGAACTCTTTATGGTTTTGGA 570645 Query 16694 AGTTAA 16699 ||||| Sbjct 570646 GGTTAA 570651 >seq145 Length=1227531 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| |||||||| || |||||||| ||||| |||||| Sbjct 691136 CTGCGTGACAACATCCAGGGTATCACTAAGCCAGCCATACGTCGTCTCGCTCGCCGTGGT 691195 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| |||||||| || | || ||||| | ||| | ||| |||||| | ||| Sbjct 691196 GGAGTAAAGCGTATCTCTGGACTGATTTACGAAGAAACTCGAGGTGTGTTGAAGGTGTTC 691255 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||| || ||| || |||||| |||||||| || | ||||| ||| Sbjct 691256 CTGGAGAACGTAATCAGAGACGCTGTCACCTATACTGAGCACGCAAAGAGGAAGACAGTC 691315 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || ||||| | || |||||||| | | | || ||||||||| Sbjct 691316 ACAGCTATGGACGTTGTGTATGCCCTTAAGCGTCAAGGAAGAACTCTGTACGGTTTTGGA 691375 Query 16694 AGTTAA 16699 | ||| Sbjct 691376 GGCTAA 691381 >seq206 Length=923294 Score = 159 bits (176), Expect = 5e-35 Identities = 185/247 (75%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || || ||||||||||||||||||||||| ||||| ||||| Sbjct 727316 CTTCGTGATAACATCCAGGGCATAACCAAGCCAGCTATCCGTCGTCTTGCTCGCCGTGGA 727375 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| ||| | || || ||| | || ||||||| | | || |||||| | ||| Sbjct 727376 GGAGTCAAACGTATTTCAGGCTTGATTTACGAAGAGACAAGAGGCGTGTTGAAGGTGTTC 727435 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| ||| || ||| || || || || || || ||||| | ||||| || Sbjct 727436 CTGGAGAACGTGATCAGAGACGCTGTTACA-TACACGGAACATGCTAAGAGGAAGACAGT 727494 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| |||| || || ||||| |||||||| | | | || || ||||| Sbjct 727495 AACTGCCATGGACGTCGTGTACGCTTTGAAGCGTCAAGGTAGAACACTGTACGGATTTGG 727554 Query 16693 AAGTTAA 16699 | ||||| Sbjct 727555 AGGTTAA 727561 >seq587 Length=210255 Score = 116 bits (128), Expect = 6e-22 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || ||||| ||||| |||||||||||||| ||| | ||||||||||| || Sbjct 27275 TCTGCGTGACAATATCCAGGGAATTACCAAGCCAGCTATTCGTAGACTGGCTCGTCGCGG 27334 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| || ||| | || || | | |||||||||| |||| || || || | || Sbjct 27335 CGGAGTAAAACGTATATCCGGTCTAATATATGAAGAGACACGTGGCGTGTTAAAAGTATT 27394 Query 16573 CCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | | || ||| || ||| || || || || |||||||| || | ||||| | Sbjct 27395 TTTGGAAAATGTGATCAGAGACGCTGTTACA-TACACGGAGCACGCAAAGAGGAAGACCG 27453 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 |||| | |||||| | || ||||| || ||||| ||||| | | | || || |||| Sbjct 27454 TCACAGCTATGGATGTTGTATATGCCTTAAAACGACAAGGTAGAACTCTGTACGGATTTG 27513 Query 16692 GAAGTTAATCT 16702 || | ||| || Sbjct 27514 GAGGCTAAACT 27524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060080105141