Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq1206 147 7e-31 seq3409 138 3e-28 seq1653 132 1e-26 seq4809 122 3e-23 seq8203 113 1e-20 >seq1206 Length=31275 Score = 147 bits (162), Expect = 7e-31 Identities = 250/360 (69%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 46125 CGTGATTTAGCGCGTGTCGAATATCGCCCAATGACAAACGCCATTAAGCA-GAGCAAGGA 46183 |||||| | || || | || || |||||| |||| | ||||| ||||| |||| | | Sbjct 17092 CGTGATATGGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTG-A 17150 Query 46184 AGCCGAGGGAAAAGAAGCTGAGCATTACCACTTCAGCAATGAAGCTAACCTCATAAACCG 46243 || |||| ||| | || | | | ||||||||||| |||||| |||| || ||||| Sbjct 17151 GGCACAGGGGAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCG 17210 Query 46244 GATCGTGCTGGGAACCACTGCGGCTAAATTCCGCAAAGAGAATGATATCGGCAAAACAGA 46303 || | ||||| | || | || ||||| || | |||| || || || | ||| Sbjct 17211 CATTGCACTGGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGA 17270 Query 46304 AGCAATCCGGGATTACCTTACCGCTGAGCAGATCCGCGCAATTACTGAATTGCAACGTGC 46363 | | |||| || || || || | |||||||||| | ||||| ||| ||||||| || Sbjct 17271 ATCTCTCCGTGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGC 17330 Query 46364 TGATACAGTCTTCATCAACATGGGGTGGGACTTTGAACGACGCAAAGCCGAGTTAAAAAG 46423 | |||| || ||||| ||||| |||||||| || | |||||||||| | | | | Sbjct 17331 TAATACGGTATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGG 17390 Query 46424 TTTATTCGATCGTAACCACCGTCAGCCGCTTATCGAAGAGCAGCACCGTCTGGCAGCCTA 46483 ||||| | ||||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 17391 AATATTCAACAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 17450 Score = 129 bits (142), Expect = 2e-25 Identities = 139/178 (78%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683 || |||| |||||||| || | || | |||||||||| | ||||| | | || ||| Sbjct 16550 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGCACCGAAAGCGCATCTAAAAACAC 16609 Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAGCC-TCGG 45742 |||||| | ||| ||||||||||| |||||| ||||||| ||||||||||||| |||| Sbjct 16610 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGCCTTCGG 16669 Query 45743 TGGGCTGAC-TTCCTGTGCGGCAACGGTTCATTTCAAAGGATAGATACACACCATGAA 45799 ||||||||| ||| | |||||| ||||||||||| || | || || || | ||||| Sbjct 16670 TGGGCTGACGTTCTATTTCGGCAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGAA 16727 >seq3409 Length=8325 Score = 138 bits (152), Expect = 3e-28 Identities = 248/360 (69%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 46125 CGTGATTTAGCGCGTGTCGAATATCGCCCAATGACAAACGCCATTAAGCA-GAGCAAGGA 46183 |||||| | || || | || || |||||| |||| | ||||| ||||| |||| | | Sbjct 4566 CGTGATATGGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTG-A 4624 Query 46184 AGCCGAGGGAAAAGAAGCTGAGCATTACCACTTCAGCAATGAAGCTAACCTCATAAACCG 46243 || |||| ||| | || | | | ||||||||||| |||||| |||| || ||||| Sbjct 4625 GGCACAGGGGAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCG 4684 Query 46244 GATCGTGCTGGGAACCACTGCGGCTAAATTCCGCAAAGAGAATGATATCGGCAAAACAGA 46303 || | ||||| | || | || ||||| || | |||| || || || | || Sbjct 4685 CATTGCACTGGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGG 4744 Query 46304 AGCAATCCGGGATTACCTTACCGCTGAGCAGATCCGCGCAATTACTGAATTGCAACGTGC 46363 | | |||| || || || || | |||||||||| | ||||| ||| ||||||| || Sbjct 4745 ATCTCTCCGTGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGC 4804 Query 46364 TGATACAGTCTTCATCAACATGGGGTGGGACTTTGAACGACGCAAAGCCGAGTTAAAAAG 46423 |||| || ||||| ||||| |||||||| || | |||||||||| | | | | Sbjct 4805 GAATACGGTATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGG 4864 Query 46424 TTTATTCGATCGTAACCACCGTCAGCCGCTTATCGAAGAGCAGCACCGTCTGGCAGCCTA 46483 ||||| | ||||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 4865 AATATTCAACAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 4924 Score = 116 bits (128), Expect = 1e-21 Identities = 138/180 (77%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683 || |||| |||||||| || | || | |||||||||| | ||||| | | || ||| Sbjct 4022 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGCACCGAAAGCGCATCTAAAAACAC 4081 Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAG--CCTCG 45741 |||||| | ||| ||||||||||| |||||| ||||||| ||||||||||| | ||| Sbjct 4082 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGTCCTTCG 4141 Query 45742 GTGGGCTGAC-TTCCTGTGCGG-CAACGGTTCATTTCAAAGGATAGATACACACCATGAA 45799 |||||||||| ||| | ||| ||| ||||||||||| || | || || || | ||||| Sbjct 4142 GTGGGCTGACGTTCTATTTCGGACAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGAA 4201 >seq1653 Length=29478 Score = 132 bits (146), Expect = 1e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26471 GTCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAAC 26530 |||||||| || |||||||| || | |||| |||| | |||||| || | | || Sbjct 556 GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTAC 497 Query 26531 CATTTCGATAGACTCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAACGCCAGCCTG 26590 ||| |||||| ||||||||| |||||||| |||||| | || | || ||||| | ||| Sbjct 496 CATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACTG 437 Query 26591 AACTAACCAACTTGCCCACGTGTGCCTCAGGTCATGAAAACGGAAGTC 26638 |||||||||||||||||| || || | ||| |||||||| | |||||| Sbjct 436 AACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTC 389 >seq4809 Length=3389 Score = 122 bits (134), Expect = 3e-23 Identities = 137/177 (77%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683 || |||| |||||||| || | || | ||||| |||| | ||||| | | || ||| Sbjct 2706 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGTACCGAAAGCGCATCTAAAAACAC 2765 Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAGCC-TCGG 45742 |||||| | ||| ||||||||||| |||||| ||||||| ||||||||||||| |||| Sbjct 2766 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGCCTTCGG 2825 Query 45743 TGGGCTGAC-TTCCTGTGCGGCAACGGTTCATTTCAAAGGATAGATACACACCATGA 45798 ||||||||| ||| | |||||| ||||||||||| || | || || || | |||| Sbjct 2826 TGGGCTGACGTTCTATTTCGGCAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGA 2882 >seq8203 Length=1368 Score = 113 bits (124), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 33599 TACAGATAACGACCGATTCCCCACTGAACGGCAGCGCGCTTCATTGCACCGGAACGACCA 33658 || ||||| |||||||| |||||||||| || || |||||||||| || || ||| Sbjct 385 TAGAGATATCGACCGATCCCCCACTGAAAAGCTGCTCGCTTCATTGAGCCAGACATGCCA 444 Query 33659 CCTTTGACGGCTTCTACCTGCGTGTTTTCAGCAGCATCCCATTTGGTTACCCATTCAGAA 33718 || || || || || ||||| || || || || | ||||| || |||||||| ||| | Sbjct 445 CCCTTAACCGCCTCCACCTGTGTTTTATCTGCGCCGTCCCACTTCGTTACCCACTCATCA 504 Query 33719 CCAATCTTGATTGATATGCCGCATTCAACGCCGCCGTT--GTTGGGAATATCGCGGTATT 33776 | ||| || ||||||| || ||||||||| | || || | | | ||| Sbjct 505 CGAATACGAATGAATATGCCACACATAACGCCGCCATCAGGTCCGGGAGA-----GAATT 559 Query 33777 CATTGCGCCA-TCCTGCTTTGCCGCAAACATCGTCCAGGCGTTTCATGATTGCCC 33830 |||| ||| | || |||| || ||||| |||||||| ||||||||||| |||| Sbjct 560 CATTTTTCCAATTCT-CTTTTCCACAAACGTCGTCCAGTCGTTTCATGATGGCCC 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149928951638028