Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08]
16,537 sequences; 706,824,083 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq1206 147 7e-31
seq3409 138 3e-28
seq1653 132 1e-26
seq4809 122 3e-23
seq8203 113 1e-20
>seq1206
Length=31275
Score = 147 bits (162), Expect = 7e-31
Identities = 250/360 (69%), Gaps = 2/360 (1%)
Strand=Plus/Plus
Query 46125 CGTGATTTAGCGCGTGTCGAATATCGCCCAATGACAAACGCCATTAAGCA-GAGCAAGGA 46183
|||||| | || || | || || |||||| |||| | ||||| ||||| |||| | |
Sbjct 17092 CGTGATATGGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTG-A 17150
Query 46184 AGCCGAGGGAAAAGAAGCTGAGCATTACCACTTCAGCAATGAAGCTAACCTCATAAACCG 46243
|| |||| ||| | || | | | ||||||||||| |||||| |||| || |||||
Sbjct 17151 GGCACAGGGGAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCG 17210
Query 46244 GATCGTGCTGGGAACCACTGCGGCTAAATTCCGCAAAGAGAATGATATCGGCAAAACAGA 46303
|| | ||||| | || | || ||||| || | |||| || || || | |||
Sbjct 17211 CATTGCACTGGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGA 17270
Query 46304 AGCAATCCGGGATTACCTTACCGCTGAGCAGATCCGCGCAATTACTGAATTGCAACGTGC 46363
| | |||| || || || || | |||||||||| | ||||| ||| ||||||| ||
Sbjct 17271 ATCTCTCCGTGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGC 17330
Query 46364 TGATACAGTCTTCATCAACATGGGGTGGGACTTTGAACGACGCAAAGCCGAGTTAAAAAG 46423
| |||| || ||||| ||||| |||||||| || | |||||||||| | | | |
Sbjct 17331 TAATACGGTATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGG 17390
Query 46424 TTTATTCGATCGTAACCACCGTCAGCCGCTTATCGAAGAGCAGCACCGTCTGGCAGCCTA 46483
||||| | ||||| || || ||||| || ||||| || ||||| ||||| || ||
Sbjct 17391 AATATTCAACAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 17450
Score = 129 bits (142), Expect = 2e-25
Identities = 139/178 (78%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683
|| |||| |||||||| || | || | |||||||||| | ||||| | | || |||
Sbjct 16550 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGCACCGAAAGCGCATCTAAAAACAC 16609
Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAGCC-TCGG 45742
|||||| | ||| ||||||||||| |||||| ||||||| ||||||||||||| ||||
Sbjct 16610 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGCCTTCGG 16669
Query 45743 TGGGCTGAC-TTCCTGTGCGGCAACGGTTCATTTCAAAGGATAGATACACACCATGAA 45799
||||||||| ||| | |||||| ||||||||||| || | || || || | |||||
Sbjct 16670 TGGGCTGACGTTCTATTTCGGCAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGAA 16727
>seq3409
Length=8325
Score = 138 bits (152), Expect = 3e-28
Identities = 248/360 (69%), Gaps = 2/360 (1%)
Strand=Plus/Plus
Query 46125 CGTGATTTAGCGCGTGTCGAATATCGCCCAATGACAAACGCCATTAAGCA-GAGCAAGGA 46183
|||||| | || || | || || |||||| |||| | ||||| ||||| |||| | |
Sbjct 4566 CGTGATATGGCCCGGCTTGAGTACCGCCCATTGACCGATGCCATCAAGCACGAGCGTG-A 4624
Query 46184 AGCCGAGGGAAAAGAAGCTGAGCATTACCACTTCAGCAATGAAGCTAACCTCATAAACCG 46243
|| |||| ||| | || | | | ||||||||||| |||||| |||| || |||||
Sbjct 4625 GGCACAGGGGAAAAACATTGCCCCTCATCACTTCAGCAACGAAGCTGACCTGATTAACCG 4684
Query 46244 GATCGTGCTGGGAACCACTGCGGCTAAATTCCGCAAAGAGAATGATATCGGCAAAACAGA 46303
|| | ||||| | || | || ||||| || | |||| || || || | ||
Sbjct 4685 CATTGCACTGGGTATGACATCCGCAAAATTTCGAGTCCACCATGAAATAGGTAAGAAAGG 4744
Query 46304 AGCAATCCGGGATTACCTTACCGCTGAGCAGATCCGCGCAATTACTGAATTGCAACGTGC 46363
| | |||| || || || || | |||||||||| | ||||| ||| ||||||| ||
Sbjct 4745 ATCTCTCCGTGACTATCTGACGCCAGAGCAGATCCACTGCATTACCGAACTGCAACGCGC 4804
Query 46364 TGATACAGTCTTCATCAACATGGGGTGGGACTTTGAACGACGCAAAGCCGAGTTAAAAAG 46423
|||| || ||||| ||||| |||||||| || | |||||||||| | | | |
Sbjct 4805 GAATACGGTATTCATTGGCATGGAATGGGACTTCGAGCAACGCAAAGCCACGCTGATGGG 4864
Query 46424 TTTATTCGATCGTAACCACCGTCAGCCGCTTATCGAAGAGCAGCACCGTCTGGCAGCCTA 46483
||||| | ||||| || || ||||| || ||||| || ||||| ||||| || ||
Sbjct 4865 AATATTCAACAAAAACCATCGCCAACCGCTGATTGAAGAACAACACCGACTGGCGGCTTA 4924
Score = 116 bits (128), Expect = 1e-21
Identities = 138/180 (77%), Gaps = 8/180 (4%)
Strand=Plus/Plus
Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683
|| |||| |||||||| || | || | |||||||||| | ||||| | | || |||
Sbjct 4022 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGCACCGAAAGCGCATCTAAAAACAC 4081
Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAG--CCTCG 45741
|||||| | ||| ||||||||||| |||||| ||||||| ||||||||||| | |||
Sbjct 4082 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGTCCTTCG 4141
Query 45742 GTGGGCTGAC-TTCCTGTGCGG-CAACGGTTCATTTCAAAGGATAGATACACACCATGAA 45799
|||||||||| ||| | ||| ||| ||||||||||| || | || || || | |||||
Sbjct 4142 GTGGGCTGACGTTCTATTTCGGACAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGAA 4201
>seq1653
Length=29478
Score = 132 bits (146), Expect = 1e-26
Identities = 130/168 (77%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 26471 GTCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAAC 26530
|||||||| || |||||||| || | |||| |||| | |||||| || | | ||
Sbjct 556 GTCAATTTTTCTGGCATGTTCGGTTAAGTGAACCGGTGATAAATGAGCGTAACGTTGTAC 497
Query 26531 CATTTCGATAGACTCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAACGCCAGCCTG 26590
||| |||||| ||||||||| |||||||| |||||| | || | || ||||| | |||
Sbjct 496 CATCTCGATACTCTCCCAGCCCCCCATTTCTTGCAATGCAGACAGGGGCACGCCTGACTG 437
Query 26591 AACTAACCAACTTGCCCACGTGTGCCTCAGGTCATGAAAACGGAAGTC 26638
|||||||||||||||||| || || | ||| |||||||| | ||||||
Sbjct 436 AACTAACCAACTTGCCCAGGTATGTCGCAGATCATGAAATCTGAAGTC 389
>seq4809
Length=3389
Score = 122 bits (134), Expect = 3e-23
Identities = 137/177 (77%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 45628 ATGCGGGGCTTTTTTGTATC--GGTATTTTACCGCGCACCGCA-GCGCA-CAATAACCAC 45683
|| |||| |||||||| || | || | ||||| |||| | ||||| | | || |||
Sbjct 2706 ATCCGGGCTTTTTTTGTGTCTTGCAATATCCCCGCGTACCGAAAGCGCATCTAAAAACAC 2765
Query 45684 CGAACCAAACCCTTTGGAATGAGCCGTTGAGGATGTCAGTTAGTGCTGGCGAGCC-TCGG 45742
|||||| | ||| ||||||||||| |||||| ||||||| ||||||||||||| ||||
Sbjct 2766 CGAACCTGAACCTATGGAATGAGCCTTTGAGGGCGTCAGTTTGTGCTGGCGAGCCTTCGG 2825
Query 45743 TGGGCTGAC-TTCCTGTGCGGCAACGGTTCATTTCAAAGGATAGATACACACCATGA 45798
||||||||| ||| | |||||| ||||||||||| || | || || || | ||||
Sbjct 2826 TGGGCTGACGTTCTATTTCGGCAAAGGTTCATTTCATAGAAAAGGTAAACGCTATGA 2882
>seq8203
Length=1368
Score = 113 bits (124), Expect = 1e-20
Identities = 168/235 (71%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 33599 TACAGATAACGACCGATTCCCCACTGAACGGCAGCGCGCTTCATTGCACCGGAACGACCA 33658
|| ||||| |||||||| |||||||||| || || |||||||||| || || |||
Sbjct 385 TAGAGATATCGACCGATCCCCCACTGAAAAGCTGCTCGCTTCATTGAGCCAGACATGCCA 444
Query 33659 CCTTTGACGGCTTCTACCTGCGTGTTTTCAGCAGCATCCCATTTGGTTACCCATTCAGAA 33718
|| || || || || ||||| || || || || | ||||| || |||||||| ||| |
Sbjct 445 CCCTTAACCGCCTCCACCTGTGTTTTATCTGCGCCGTCCCACTTCGTTACCCACTCATCA 504
Query 33719 CCAATCTTGATTGATATGCCGCATTCAACGCCGCCGTT--GTTGGGAATATCGCGGTATT 33776
| ||| || ||||||| || ||||||||| | || || | | | |||
Sbjct 505 CGAATACGAATGAATATGCCACACATAACGCCGCCATCAGGTCCGGGAGA-----GAATT 559
Query 33777 CATTGCGCCA-TCCTGCTTTGCCGCAAACATCGTCCAGGCGTTTCATGATTGCCC 33830
|||| ||| | || |||| || ||||| |||||||| ||||||||||| ||||
Sbjct 560 CATTTTTCCAATTCT-CTTTTCCACAAACGTCGTCCAGTCGTTTCATGATGGCCC 613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149928951638028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |